Methylomagnum ishizawai: MishRS11D_09880
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Entry
MishRS11D_09880 CDS
T07434
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
misz
Methylomagnum ishizawai
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
misz03016
]
MishRS11D_09880 (rtcB_1)
Enzymes [BR:
misz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MishRS11D_09880 (rtcB_1)
Transfer RNA biogenesis [BR:
misz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MishRS11D_09880 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
MishRS11D_09880 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Tc-38
Motif
Other DBs
NCBI-ProteinID:
BBL73890
LinkDB
All DBs
Position
1077878..1079074
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AA seq
398 aa
AA seq
DB search
MPIQRIMTKGRVPVKIYTDEVDSEAMQQLYNLSQLPFIHSHIAVMPDVHAGTGATVGSVI
PTLGAIIPAAVGVDIGCGMSALRLSIRADQLPDNLRSLRLAIEAAIPVGFNMHKQDRARE
STIRALSQGLHRLLQKHPKLHAQQKKPYQTWIRQIGTLGGGNHFIELCLDENQDVWVMLH
SGSRGIGSAIGEYYINLARKDMGRHLHNLPDKNLAYFTEGAGHYEDYVEAIGWAQDYAAA
NRREMMYLIAEVLRKKLPRFGVTKEVIHCHHNYVARERHFDATVWVTRKGAIRAGEGEWG
IIPGSMGTKSYIVRGKGDPQAFCSCSHGAGRRMSRSAAKRQFDERHAEAQTLGVECRKDG
GIVDELPGAYKDIDSVMAHQSDLVEVVHTLKQVLCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctatccaaaggattatgaccaagggccgggtgccggtgaaaatctataccgacgag
gtggactcggaagccatgcagcagttgtacaacctctcgcaactgccgttcatacatagc
catatcgcggtcatgcccgatgtccacgcgggcaccggcgcgaccgtgggttcggtgatc
cccaccctgggggcgattatcccggcggcggtgggggtggatatcggttgtggtatgagc
gccctgcgcttatcgatccgggccgatcaattaccggataacctcaggtcgttgcgcttg
gctatcgaagcggcgattcccgtgggtttcaatatgcataagcaggaccgcgcccgcgaa
tccaccatccgggctttgtcgcagggtttgcaccggctgttgcagaaacatccgaagctc
catgcccagcaaaaaaagccctaccaaacctggattcggcaaatcggcaccttgggtggc
ggcaatcatttcatcgagctttgcctggatgagaaccaggacgtttgggtgatgctgcat
tccggtagccgggggatcggcagcgccatcggcgagtattacatcaacctggcccggaag
gatatggggcggcatttgcataacctgcccgataagaatctggcctatttcaccgaaggg
gccgggcattatgaggactatgtggaggccatcggttgggcacaggattatgccgccgcc
aaccgccgggaaatgatgtatctcatcgccgaggtattgcgcaagaaactcccccggttc
ggcgtgaccaaggaggtgatccattgccatcacaattatgtggcccgcgagcgccatttc
gacgcaaccgtgtgggtgacgcgcaagggcgcgatccgggcgggggagggggaatggggc
atcatccccggcagcatgggcacgaaatcctatatcgtgcgcggcaagggcgatccgcaa
gcgttttgctcgtgttcgcacggggcggggcggcgcatgagccgctcggcggccaagcgc
caattcgacgagcgccacgccgaggcgcaaaccctgggcgtggagtgccgcaaggatggc
ggcatcgtcgatgagttgcccggtgcctacaaggatatcgacagcgtcatggcacaccag
agcgatctggtcgaggtggtccataccttgaagcaggtgctgtgcgtgaagggatag
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