Methylomagnum ishizawai: MishRS11D_13270
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Entry
MishRS11D_13270 CDS
T07434
Name
(GenBank) hypothetical protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03030
DNA replication
misz03430
Mismatch repair
misz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MishRS11D_13270
03430 Mismatch repair
MishRS11D_13270
03440 Homologous recombination
MishRS11D_13270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
misz03032
]
MishRS11D_13270
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_13270
Enzymes [BR:
misz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MishRS11D_13270
DNA replication proteins [BR:
misz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MishRS11D_13270
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MishRS11D_13270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BBL74229
LinkDB
All DBs
Position
1450401..1455038
Genome browser
AA seq
1545 aa
AA seq
DB search
MADQLPEPRFIHLRLHTEYSLVDGLVDVKPLVKRCAKLGMPAVAVTDQMNLFALVKFYKA
AQGGGLKPIAGADLLIHNESDPATPYLMPLFVQNEQGYRTLTELISRGYRENQHQGVPQV
MAAWLADKNTGLIALSGARQGQIGRALLSGNRDEAKRILEHWQAVFGDRFYLEVQRTGRP
GEEDYIEGTLALAIECDAPVVATNDVRFLDASDFEAHEARVCINQGRVLDDPRRPRDYTD
QQYLKSPEEMAALFADLPEALENTVEIAKRCNIRMTLGKNFLPQFPVPEGMTPAEFFAEE
SRKGLRERLAVRPPTGKGTLAQRTQAYEERLELEIGVINQMDFPGYFLIVADFIQWAKQN
GIPVGPGRGSGAGSLVAYSLKITDLDPIEFELLFERFLNPERVSMPDFDVDFCMDRRDEV
IAYVAEKYGRDRVSQIITYGSMAAKAVVRDVGRVLGHPYGFVDRIAKLIPFELGMTLEKA
LQDSEDLKKLYDADEEVKALIDLAKSLEGLTRNAGKHAGGVVIAPSQLIDFSPLYCEQGG
DNLVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWALETINQQRAAQKLPPVDIAQIPLDDP
DTYKLLKSCQTTAVFQLESRGMKDLIRRLLPDNFDDIVALVALFRPGPLQSGMVDDYINV
KHGKQKAEYPHPILEPILQPTNGVILYQEQVMRIAQDMSGYTLGGADLLRRAMGKKKPEE
MAKQRDIFVEGAEKNGVDKDVANFIFDLVDKFSGYGFNKTVSSDTKIFTTAGIKRIEDCQ
PGDEVIAPNPDGSFSRTQVLARHDHGFVPLWEVVFDDGTRECCTLDHKWLTRHGQLPLWA
ILQMGEQVWGNPAYKAGYPRPSETLSTMFEHDPYRADRRQGQDDVLRNHRADLGQIQRAF
PELSEMPGIAPGNPGEYLQESKAYRSDAEKIFGECQENRVAPGDTRRTGIPAQTMAGGSS
RTVRCNPGQGPRLAQAFQNGELAGTAVDAPWVYQEYPLGLWRDTQAGGFYKSHLKNRHRG
RWPVALPAGSLAEIAYDSATPGPNFGQGNIDALLALNPALDGTFQIQLWRAYLSQPRPLI
SGRRRWRLDGNTVLRQPVRVTFLGWDQGYDLEVAHPEHHFLLASGLCCSNSHSAAYALVS
YQTAWLKAHYPAAFMAAVLSSDMDKTDKVVVFIEECRQMRLTLLPPDINRSEFRFTVLPG
GAIQYGLGAIKGVGENAIGDILEERRRHGPYQDLYDFCQRIDLRKANRRVLEALIRGGAL
DSFDPNRARHLAELPDALKAAEQHGAMADSGQDDLFGLLGGGVAEAAAKPARPVVQVEPW
GEAERLEHEKNTLGLYLTGHPIGPYEADIVQFVTDRLGPLAEKHDRSPGTPSWQRQENKV
VVAGLVVELRTKQNKSGKRMGFATLDDRTGRLEVAVFSEAFEKYRNYLEKDSLLVAVGNL
GFDDFAGQLRLSAERLLTIEEARAEFAKRLTIAWPGPEAALAVDELRELLAPHRGGACPV
LVEYRSRSAQGVIQLGQAWRVVPGAALLARLEKRIGVERVKLLYR
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccaactccccgaaccccgcttcatccacctccgcctccacaccgaatactcc
ctggtcgatggtctcgtcgatgtgaaacccctggtcaagcgctgcgccaagctggggatg
ccggcggtggccgtgaccgaccagatgaacctgttcgccctggtcaagttctacaaggcc
gcgcagggcgggggcttgaaacccatcgccggggccgacctcctgatccacaacgaatcc
gacccggccacgccctacctgatgcccttgttcgtgcagaacgaacagggctaccgcacc
ctcaccgaactcatttcccgtggctaccgcgagaaccagcaccaaggcgtgccccaggtc
atggccgcgtggctggcggacaagaacacagggctgatcgccctttccggtgcccgccaa
ggccagattggccgggcgctgctgtcgggcaaccgcgacgaggccaagcgtatcctggaa
cattggcaggccgtgttcggcgaccgcttctatctggaagtgcagcgcacgggccgaccc
ggcgaggaggactatatcgagggcaccctcgccctcgccatcgaatgcgatgcgcccgtg
gtcgccaccaacgatgtgcgcttcctcgacgccagcgatttcgaggcccacgaggcgcgg
gtctgcatcaaccagggccgggtgttggacgatccgcgccgtccccgcgactacaccgac
cagcaatatttgaaaagcccggaggaaatggcggcgctgttcgccgacctgcccgaggcg
ttggaaaacacggtggaaatcgccaagcgctgcaatatccgcatgacgctgggcaagaac
ttcctgccgcaattcccggtgccggaaggcatgacccccgccgaattcttcgccgaggaa
tcgcgcaaaggtttgagggagcgcctcgccgtgcgcccgcccaccggcaagggcaccttg
gcgcagcgcacccaagcctatgaggagcggctggaactcgaaatcggcgtcatcaaccag
atggatttccccggctacttcctgatcgtggccgacttcatccaatgggccaagcaaaac
gggattccggtcgggccgggacgcggctcgggcgcgggttccttggtggcgtattcgctc
aagatcaccgacctcgaccccatcgaattcgagttgctgttcgagcgcttcctcaatccc
gagcgcgtgtccatgcccgacttcgacgtggatttctgcatggaccggcgcgacgaggtg
atcgcctatgtcgccgagaaatatggccgcgaccgggtatcgcagatcatcacctatggt
tccatggcggccaaggcggtggtgcgcgacgtgggccgggtgttgggccatccctacggc
ttcgtggaccgcatcgccaagctgatcccgttcgagctggggatgaccctggaaaaagcc
ttgcaggacagcgaggacttgaaaaagctctacgacgccgacgaggaggtcaaggcgctg
atcgatctggcgaagtcgctggaaggcttgacccgcaacgccggcaagcatgccgggggc
gtggtgatcgcgccttcgcagttgatcgacttcagcccgctctattgcgaacagggcggc
gacaacctcgtgacccagttcgacaaggacgacgtggaagcggtcggcttggtcaagttc
gacttcctggggctgcgtaccctgaccatcatcgattgggcgctggaaaccatcaaccag
cagcgggccgcgcaaaaactgccgccggtcgatatcgcccaaatcccgctcgacgacccc
gacacctacaagctcctgaaaagctgccagaccacggcggtattccaactcgaatcccgc
ggcatgaaggatttgatccggcgcttgctgcccgataatttcgatgacatcgtggccttg
gtggccttgttccggcccggtcctttgcaatcgggcatggtggacgattatatcaacgtc
aagcacggcaagcagaaggccgagtatccccatcccatcttggaacccattttgcagccg
accaacggggttatcctgtaccaggaacaggtgatgcggattgcccaggatatgtcgggg
tatacgctgggcggggcggatttgctacgccgtgcaatgggtaagaaaaagccagaagaa
atggcgaaacagcgcgatatttttgtggaaggcgctgaaaagaatggtgtagataaggat
gtcgccaattttatatttgatttggtggacaaattttcggggtatggttttaacaaaacg
gtatcttcggatactaaaatatttaccacggcaggaataaagagaatagaagactgccaa
ccaggggacgaagtcatcgcgccgaatcccgatggcagcttcagccggacccaggtttta
gctaggcacgaccatggttttgttccactttgggaggtggttttcgatgacggcacccgc
gaatgttgtaccctcgaccataaatggcttacccgacacggacagctcccgctctgggcc
atcctccaaatgggtgagcaagtgtggggaaacccagcctacaaagcgggctatccacgc
ccatcagaaacattgtccacaatgtttgagcatgatccataccgggccgaccgccggcaa
ggacaggacgatgtattgcggaatcatcgtgcggacttgggccaaattcagagagcattt
ccagagttgtccgagatgccaggaattgcgccgggaaatccgggtgaatacctgcaagaa
tctaaagcataccgaagcgatgcggaaaaaatattcggagaatgccaagaaaaccgcgtc
gcgcccggagatacaagaagaacgggcatcccggctcaaacaatggcgggaggatcatcc
cgaacagttcgatgcaatccgggccaaggcccacgcctcgcccaagctttccaaaatgga
gaattggctggcaccgcggttgatgccccatgggtttatcaggaatacccgcttggattg
tggcgggatactcaagcaggtggattttataaatcacaccttaaaaatcgccatcgaggt
cgatggcccgtggcacttcctgccggttcgctcgcagaaatcgcttatgacagtgcaacg
ccgggaccgaattttggacagggaaatattgacgcgctcttggcgcttaatccggctctc
gatggaacgtttcaaatccaactctggcgagcttatctctcccagcctcgaccacttatt
agcggtcgtcgccgctggcgattggacgggaatacggtgctacggcagcctgtacgagtc
actttcctgggatgggatcaaggttacgatcttgaggtagcccacccggaacatcatttc
ctgctggcctccggcttgtgctgctcgaactcccattccgccgcatatgctttagtttcc
taccaaaccgcctggctcaaagcccattatcccgccgccttcatggccgcggtcctgtcc
tccgatatggacaagaccgacaaggtcgtcgtcttcatcgaggaatgccgccaaatgcgg
ctgaccctgttgccgcccgatatcaaccgctccgaattccgcttcaccgtgctgcccggc
ggcgcgatccaatacgggctcggggccatcaagggcgtgggcgagaacgccatcggcgat
atcctggaagagcgccgccgccacggtccttatcaagacctctacgacttctgccagcgc
atcgatctcaggaaggccaaccgccgggtgctggaagccttgatccggggcggggcgctg
gattcgttcgatccgaaccgcgcccgccatctggccgaattgcccgacgccctcaaggcc
gccgagcaacacggggccatggccgattccggccaggacgatttgttcgggctcctgggc
ggcggcgtggccgaggcggcggcgaagccggcccggcccgtggtccaggtcgaaccttgg
ggcgaggccgagcggctcgaacacgaaaagaacaccctgggcctttacctcaccggccat
cccatcggcccctacgaggcggatatcgtccagttcgtcaccgaccgcctggggcctttg
gccgagaagcacgacaggagtcccggcacccccagttggcaacgccaggaaaacaaggtc
gtggtggccgggctggtggtggaactccgcaccaagcagaacaaatccggcaagcgcatg
ggcttcgccaccctggacgaccgcaccgggcggctggaggtcgcggtgttctcggaggcg
ttcgagaaataccgcaattatctggagaaggacagcttgttggtggcggtgggcaacctg
gggttcgacgatttcgccgggcaattgcggctgagcgccgagcggctgttgactatcgag
gaagcgcgggccgagttcgccaagcgtctgaccatcgcctggccgggaccggaagcggcg
ctggcggtggacgagttgcgcgaattgctcgcgccccaccgcggcggggcctgcccggtc
ctggtcgaataccgcagccgctcggcgcagggcgtgatccaactggggcaggcgtggcgg
gtggtgccgggggcggcattgctggcccggctggaaaagcggatcggggtggaacgggtg
aaactgctttatcgatga
DBGET
integrated database retrieval system
