Methylomagnum ishizawai: MishRS11D_13470
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Entry
MishRS11D_13470 CDS
T07434
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
misz
Methylomagnum ishizawai
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
misz03016
]
MishRS11D_13470 (truD)
Enzymes [BR:
misz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
MishRS11D_13470 (truD)
Transfer RNA biogenesis [BR:
misz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
MishRS11D_13470 (truD)
Prokaryotic type
MishRS11D_13470 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
BBL74249
LinkDB
All DBs
Position
complement(1473773..1474729)
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AA seq
318 aa
AA seq
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MVEEILGFAPSGEGEHVFLKVEKRGENTEYVARQLARYAGVGSREVGYAGLKDRHGLTVQ
WYSVQLPGKDGPDWSALASPSLRVLEVNRNSRKLKKGAASGNRFVITLKQVDGDPEALSA
RLRQIAALGVPNYFGKQRFGHEGQNLARAAELFAGTLGRVDPHKRGIYLSAARSEIFNRL
LARRVADGTWNQAVEGDAFMFGDSRSFFKPEAPTPDILQRLADRDIHPSGVLWGKGASAA
TGAAAALELAVAEELADFCHGLERFDLETARRPFRLCPQDLRWEFPDPASLRLEFALPSG
AYATTLLRELVGTDFSDD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaggaaatcctgggcttcgcgccttccggcgaaggcgaacacgtgttcctcaag
gtcgagaagcgcggcgagaacaccgaatatgtcgcccgccaactggcgcgttacgccggg
gtcggctcccgcgaggtcggctacgccgggctgaaggaccgccacggcctcaccgtgcaa
tggtatagcgtgcaactgccgggcaaggacggacccgattggagcgccctagcctcgcct
tcgctgcgcgtcctcgaagtcaaccgcaatagccgcaagctcaagaaaggcgcggccagc
ggcaaccgtttcgtcatcaccctgaagcaggtcgatggcgaccccgaagcgctttcggcc
cgcttgcgccaaatcgcggcgctgggcgtgcccaattatttcgggaagcaacgcttcggc
cacgaaggccagaacctcgcccgcgccgccgaattgttcgcgggcaccctgggccgggtc
gatccccacaaacgcgggatttatctgtccgccgcccgctccgaaatcttcaaccggctg
ctggcccggcgcgtcgcggacggcacatggaaccaagccgtcgagggcgacgccttcatg
ttcggggactcgcggagcttcttcaaaccggaagcgccgacgccggatatcctgcaacgg
ctggccgaccgggacatccaccccagcggcgtgctatggggcaagggcgcatccgccgcc
accggcgcggcggcggcgctggaactcgcggtggcggaggaactggcggatttctgccat
gggctggaacgcttcgacctggaaacggcgcggcggcccttccggctctgcccgcaagac
ctgcgctgggaattccccgacccggcaagcctgcgcctggaattcgccctgccttccggt
gcctatgccaccaccctgttgcgcgaattggtcggcaccgatttctcggacgactga
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