Methylomagnum ishizawai: MishRS11D_23630
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Entry
MishRS11D_23630 CDS
T07434
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
misz
Methylomagnum ishizawai
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_23630 (sbcC)
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MishRS11D_23630 (sbcC)
Archaeal homologous recombinant proteins
MishRS11D_23630 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
RsgA_GTPase
AAA_21
AAA_22
nSTAND3
AAA_15
Motif
Other DBs
NCBI-ProteinID:
BBL75265
LinkDB
All DBs
Position
2632323..2636063
Genome browser
AA seq
1246 aa
AA seq
DB search
MKILAIRGKNLASLAGEFQVDFRMEPLASAGLFAICGPTGAGKSTLLDALCLALYNRTPR
LAGVPGQGVELPDVKDSPIGQQDTRNLLRRGAGEGYAEVEFLGNDGHEYRARWSVWRANR
KPGNKLQAVDMSLVKLPEAIAIGARKTEVLPEIEQRLGLSFEQFRRAVLLAQNEFAAFLK
ADDAERGKLLETLTGTQIYSLLSRKAHERDKEEQAKLKELQARLEGHKPLDPAERRAHEA
EHAAAVEATARLETERDTLESHLRWHGEWSEAQANEAAALARHQDNERHHAEAEPRRRFL
ARLAQVRAAATPLRAADEAEAQVETARAEAARLEAEAEAAEQTRAQAATALESARAATLA
AQQAQAAAAPDLERAKALDTETALTAQTHAERARELETARAALAQAEQQFAASRTEQAAT
TQEYETTAAWLAADKQAITRKLSEAWPRWDELLRSAGIQERETVAALAQQSQAARDVETS
LNAREQARLAREQEERAAQAAETGYQAAERTSAGFDGEKLAGERRALDARRDDLARAEKL
WRGYAEAETRRAELEQQRDRLDQDRAAATAELARIAADKPGTEARAHQAQHALDTAKLAC
AENIEQLRGQLAPGQPCPVCGSPEHPYAQEAPALRAVLDALAQAATAQRQALETLLDQER
GQRAALALCQKQAADIQPALDRLAHDTARLAATWTAEPLAGELAEIPEPGRPGWFATQLA
AVNTARADLETRETAARRAQAALDTARQIRDTAREALNLARQRETAAETARARHQDALGQ
AEALALQAAERRDRSLADLAQILPDSGWQDPWRADPGGFHAKLKQRVDIYQARQRQRDAL
KQRLEILAATLGSQQAAQQKALDQHREAERIFQDIDRRLSQQRGERARLFDGASTAAVEN
TLRQALEAAQDRERTATRTAEQARTQATTAHTRLDSAHHRLGQHEQAARTRADALAEWLA
HFNAERPQEPALDLAGLRQLLGHDAPWIETERLALQALADALRETRAIAEERRQRRLAIE
QRRATPATADSLRGRLALLAEELKAADTRRVELAALLRADDQRQAQTAALLAGIGQQAAS
ARLWGQLNELIGSHDGKKFRNYAQQLSLEVLIAYANRHLADLSRRYRLRRVPDKLALMVE
DRDMADEVRSVHSLSGGESFLVSLALALGLAALSSNKVRVESLFIDEGFGSLDSDTLRVA
MDALDCLHAQGRKVGVISHVQEMTERIGTRVQVKRLAGGKSRVYIG
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctggcgatacgcggcaagaacctcgcctcgctggcgggggaattccaggtg
gatttccgcatggaacctttggcctcggcgggtttgttcgccatctgcggccccaccggc
gcgggcaaaagcaccttgctcgacgcgctctgcctcgcgctctacaaccgcacgccgcgc
ctcgccggggtgccgggccagggcgtggaattgccggacgtgaaggattcgcccatcggc
cagcaggacacccgcaacctcctgcggcgcggggcgggcgaaggctatgccgaggtcgaa
ttcctgggcaacgatggccacgaataccgcgcccgctggtcggtatggcgggccaaccgc
aagcccggcaacaagctgcaagccgtggacatgagcctcgtcaaactgccggaagccatc
gccatcggtgcccgcaagaccgaagtcctgcccgagatcgaacagcgcctgggactcagc
ttcgagcaattccgccgcgccgtgctattggcccagaacgaattcgccgccttcctcaag
gccgacgacgccgagcgcggcaagctgttggaaaccctgaccggcacccagatttatagc
ctgctgtcgcgcaaggcccacgaacgcgacaaggaggaacaggccaagctgaaggaactc
caggcccggttggaaggccacaagccgctggaccccgccgagcgccgcgcccacgaagcc
gaacacgccgccgccgtggaagccaccgcccggctcgaaaccgagcgcgacacgctggaa
agccatctgcgctggcacggggaatggtcggaagcccaggccaacgaagccgccgccctt
gcccgccaccaagacaacgagcgccatcacgccgaagccgaaccgcgccgccgcttcctg
gcccggctcgcccaggtgcgagcggcggcaaccccgctccgcgccgccgacgaagcggag
gcccaagtcgaaaccgcccgcgccgaagccgcccgcctcgaagccgaagccgaagccgcc
gaacaaacccgcgcccaggccgcaaccgccctggagtccgcccgcgccgccacgctcgcc
gcccaacaggcccaagccgccgccgcgcccgacctggaacgggccaaagcgctggacacg
gaaaccgccctcacggcccagacccacgccgaacgcgcccgcgaactggaaaccgcccgc
gccgccttggcccaagccgaacagcagttcgccgcctcccggaccgaacaagccgcgacc
acccaggaatacgaaaccaccgccgcttggctggcggcggacaagcaagccatcacccgg
aagttgtcggaagcctggccgcgctgggatgaattgctccgatccgccggtatccaagag
cgggaaaccgtcgccgccctcgcccagcaatcccaagccgcccgcgacgtggaaaccagc
ctgaacgcacgggaacaagcccgcctagcccgcgaacaggaagaacgcgccgcccaagcc
gccgaaaccggataccaagccgccgaacgcaccagcgccggtttcgacggggaaaaactg
gccggggaacgccgcgccctggacgcccggcgcgacgacttggcgcgggcggaaaagctg
tggcggggctacgccgaagccgaaacccgccgcgccgaactcgaacagcaacgcgaccgc
ctggaccaagaccgcgccgccgccaccgccgaactcgcccgcatcgccgccgacaaaccc
ggcaccgaagcccgcgcccaccaagcccaacacgccctcgacaccgccaagctggcctgt
gccgaaaatatcgagcaattgcgcggccagttggcaccgggccaaccctgcccggtctgc
ggctcgcccgaacatccctacgcccaggaagcaccggccctgcgcgccgtgctggacgcg
ctcgcgcaagccgccaccgcgcaacggcaagccctggaaacccttctggaccaggaacgc
ggccaacgtgccgcgctggccctctgccaaaaacaagccgcagacatccaacccgccctg
gaccggctcgcacacgacaccgcccggctggccgcgacgtggacggcggaacccttggcc
ggagaactggcggaaatcccggaacccggccgccccggctggttcgccacccaactggcg
gcggtcaacacggcgcgggccgacctggaaacacgggaaaccgccgcccgccgcgcccag
gccgcgctcgacaccgcccgccaaatccgcgacaccgcccgcgaggcgctgaacctggcc
cggcagcgcgaaaccgccgccgaaaccgcccgcgcccgccaccaggacgccctgggccaa
gccgaagccctcgccctgcaagcggcggaacggcgcgaccgctcgctggccgacctcgcc
caaatcctgccggactccggctggcaagacccttggcgggccgatcccggcggtttccat
gccaagctcaagcagcgggtggatatctaccaagcgcggcaacgccagcgcgacgcactg
aaacagcggctcgaaatcctggccgcgaccctcggttcccaacaagcggcgcaacaaaaa
gccctcgaccagcaccgggaggccgaacggattttccaggacatcgaccgccgcttgagc
caacaacgcggcgaacgcgcccggctattcgacggcgcatccacggcggcggtggaaaac
accctgcggcaagccctggaagccgcccaagaccgggaacgaaccgccacccgaacagcg
gagcaagcccgcacccaggccaccaccgcgcacacccgcctggattcggcccaccaccgg
ctcggccagcatgaacaagcggcccggacccgcgccgacgccctggctgaatggctggcc
cacttcaacgccgagcgcccgcaagaacccgccctcgacctggccggactgcgccaactc
ctgggccacgacgccccctggatcgaaaccgaacgcctagccctgcaagccctcgccgac
gccctgcgggagacccgcgccatcgccgaggaacgccgccagcgccgcctcgccatcgaa
caacgccgcgccaccccggccacggcggacagcctgcgcggacgcctcgccctcctggcc
gaagaactcaaggccgccgacacccgccgggtggaactcgcggccctgctccgcgccgac
gaccagcgccaagcccagaccgccgccctcctggccgggatcggacagcaagcggccagc
gcccggctctggggccagctcaacgagttgatcggttcgcacgatggcaagaaattccgc
aactacgcccagcagctcagcctggaggtgctgatcgcctacgccaaccgccatctggcc
gacctatcgcggcgctaccggctcaggcgggtgccggacaagctggccctgatggtggag
gaccgggacatggccgacgaggtgcgctcggtgcattcgctgtcgggcggggaatcgttc
ctggtgtctctggccctggccctggggctggccgcgctgtcctcgaacaaggtgcgggtg
gaatcgctgttcatcgacgagggcttcggcagcctcgacagcgacaccctgcgcgtcgcc
atggacgccctggattgcctgcacgcacaggggcggaaggtgggggtcatctcccatgtg
caggagatgaccgagcggatcgggacgcgggtccaggtcaaacgcctggcgggggggaaa
agccgggtgtacatcggctga
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