Methylomagnum ishizawai: MishRS11D_31830
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Entry
MishRS11D_31830 CDS
T07434
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MishRS11D_31830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
misz03019
]
MishRS11D_31830 (rnr)
03016 Transfer RNA biogenesis [BR:
misz03016
]
MishRS11D_31830 (rnr)
Enzymes [BR:
misz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MishRS11D_31830 (rnr)
Messenger RNA biogenesis [BR:
misz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MishRS11D_31830 (rnr)
Transfer RNA biogenesis [BR:
misz03016
]
Prokaryotic type
tRNA degradation factors
MishRS11D_31830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
WHD_MCM
Motif
Other DBs
NCBI-ProteinID:
BBL76085
LinkDB
All DBs
Position
complement(3518105..3520327)
Genome browser
AA seq
740 aa
AA seq
DB search
MAKHSNLKDPFAEREAGKYARPIPSRELILEIMRERGVPQKLEEIATQLELTEAEDIESL
RRRLNAMERDGQLLKNRRDRYCVVDHTDLIAGRVIGHAEGFGFLRPDEGGEDLYLSSKEM
RALMHDDRALVSVRGVDRRGRREGGLIQVLERNTQRLVGRLFQERGISYVVPDNKHIAHD
ILIPEEHLCAAQPGQFVLVEIIEQPTRQRDPIGKITQVIGDHMAPGMEIEVAIRSFDLPA
EWPDAVLDQIAGMDENVPEAAKAGREDLRHLPLVTIDGEDARDFDDAVYCERTAKGWKLY
VAIADVSAYVLPGTALDEEAQKRGTSVYFPDRVIPMLPEILSNGLCSLKPEVERLCMVCE
MYITAEGGILRARFFSGLMRSKARLTYTEVAKLLVEGDKGLRRQYRDLLPHLEELHALYR
VLRRAREERGAMDFDTQESRIVFGEGKKIEKIVPVVRNDAHRLIEECMLAANTATARYLA
RQKIPHVVRVHEGPNAEKLTDLRAFLGRLGLNLGGGDTPEPKDYFVLSDQIAGRPDEHLI
QTILLRSMSQAVYGPEKKGHFGLALDAYTHFTSPIRRYPDLLVHRAIRHSLEGKQKGEFP
YTASDMVVLGEHCSFTERRADDATRDVVAWLKCEYMQDKLGEQFEGVISTVTGFGFFVEL
KDVFIEGLVHISTLDKDYFHYDPVGYRLQGERTGKVYRLGDSVEVVVARVDLDERKIDLE
LVKAEAKPAPAGRPRKRRRK
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacacagcaacctgaaggatccattcgccgagcgcgaggccggaaaatacgcg
cgtcccatccccagccgggaactcatcctggaaatcatgcgggagcgcggggtaccgcag
aaactggaggaaatcgccacccagctggagctgaccgaggccgaggacatcgaatccctg
cggcggcgtttgaacgccatggagcgcgacggccagctcctcaagaaccgccgcgaccgc
tattgcgtggtggaccacaccgatttgatcgcgggccgggtgatcggccatgccgagggt
ttcggcttcctgcgtcccgacgagggcggcgaagacctttatctctcttccaaggaaatg
cgcgccctgatgcacgacgaccgggccttggtcagcgtgcgcggggtggaccggcgcggg
cgccgggaaggcggcttgatccaggtcttggagcgcaacacccaaagattggtcgggcgc
ttgttccaggagcgcggtatctcctacgtggtgccggataacaagcatatcgcccacgat
atcctgattcccgaagagcatttgtgcgccgcccagccggggcagttcgtcctggtcgag
atcatcgagcaacctacccgccagcgcgatcccatcggcaagatcacccaggtgatcggc
gaccacatggcccccggcatggaaatcgaggtggcgatccgcagcttcgacctgcccgcc
gaatggccggacgcggtcctcgaccaaatcgccgggatggacgagaacgtgcccgaagcg
gccaaggcgggccgcgaggatttgcgccatctgccgctcgttaccatcgatggcgaggac
gcccgcgacttcgacgacgccgtgtattgcgagcgcacggccaagggctggaagctctat
gtcgccatcgccgatgtgtccgcctacgtgctgccgggcacggccttggacgaggaagcc
cagaagcgcggtacttcggtctatttcccggaccgggtgattccgatgctgccggaaatc
ctgtccaacggcctttgctcgctcaagcccgaggtcgagcgcttgtgcatggtgtgcgag
atgtacatcaccgccgagggcggcattttgcgcgcgcgcttcttctccggcctgatgcgc
tccaaggcgcggctgacctataccgaggtcgccaagctgctggtcgagggcgacaagggc
ttgcgccgccagtaccgcgacctgctgccgcatctggaagaactccatgccttgtaccgg
gtgttgcgccgcgcccgcgaggaacggggggcgatggatttcgacacccaggaatcgcgc
atcgtgttcggcgaaggcaagaagatcgagaagatcgtgccggtggtccgcaacgacgcc
caccgcttgatcgaggagtgcatgttggccgccaacaccgccaccgcccgctatctcgcc
cgccagaaaatcccccatgtggtgcgtgtccacgaaggcccgaatgccgagaagctgacc
gatctgcgggcgttcctgggccgcttgggcctgaatctgggcggcggcgatacgcccgag
cccaaggattatttcgtgctgtcggatcaaatcgcgggccgcccggacgagcatttgatc
cagaccatcctgctgcgctccatgtcccaggccgtctatggccccgagaagaaaggccat
tttggcttggcgctggatgcctacacccatttcacctcgccgatccggcgctacccggac
ctcctggtccaccgcgccatccgccatagcctggaaggcaagcagaagggcgaattcccc
tacaccgccagcgatatggtggtgctgggcgaacattgctccttcaccgaacgccgcgcc
gacgacgccacccgcgatgtggtggcttggctcaaatgcgaatacatgcaggacaaactg
ggcgagcagttcgagggcgtgatttcgacggtgacgggcttcggtttcttcgtggaattg
aaggatgtcttcatcgagggcttggtgcatatctccaccctcgacaaggattatttccat
tacgatcccgtgggctaccgcttgcagggcgagcgcaccggcaaagtttaccggctcggc
gatagcgtcgaagtggtggtggcgcgggtggacctggacgagcgcaagatcgacctcgaa
ctggtcaaggccgaagctaaaccggccccggcgggccgcccccgcaagcggaggcgcaaa
tga
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