Methylomagnum ishizawai: MishRS11D_33450
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Entry
MishRS11D_33450 CDS
T07434
Symbol
nifA
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
misz
Methylomagnum ishizawai
Pathway
misz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MishRS11D_33450 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
misz03000
]
MishRS11D_33450 (nifA)
Transcription factors [BR:
misz03000
]
Prokaryotic type
Helix-turn-helix
Other families
MishRS11D_33450 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
GAF_2
AAA_5
Mg_chelatase
AAA
AAA_2
GAF_3
AAA_3
AAA_7
Parvo_NS1
nSTAND3
TIP49
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BBL76247
LinkDB
All DBs
Position
3721594..3723144
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AA seq
516 aa
AA seq
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MVERTELVEHELDALYQVSRVLNGTLSLQDKLRQVLEVLHQRAGMRAGLITLRELDSDAL
SVCAVHREGGEPLDDKVSYQPGEGLVGAILDKGDTLIVERLAEEPRFLGKLKLYDPELPF
IGSPIHVGDNEMVGVLAAQPVANDWLRDRARFMEMVANLIAQSAGLLRSMEQKQRDLAME
RDQLKQTLRKNYRFENIIGHAQPMMRVLELVRQVSKWNTTVLIRGESGTGKEVIANAIHY
NSACANGPFLRLNCAALPDNLLESELFGHEKGAFSGAVTLRKGRFELAHNGTLFLDEIGE
ISPAFQAKLLRVIQEGEFERVGGSQTLKVNVRIIAATNRDLEYEVDEGRFREDLYYRLNV
MPIHLPPLRERLEDIPELARFLLGRISKQQGGRPLELKESAIRLLMRYSWPGNVRELENR
IERAAIMSPDGVIDRDVLALSGFEDDLNTPAPKPSSASSKEATIDFTDESLDERERVIAA
LEQSGWVQAKAARLLNMTPRQIAYRVQTLNIKMKRI
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggttgaacgcactgaactcgtcgagcatgagttggacgcgttatatcaagtcagccgg
gttttgaacggcaccttgagcttgcaggacaaactccggcaggtcttggaagtgttgcac
cagagggccggcatgagggccgggctcatcaccctccgggaactggacagcgacgcgctg
tcggtgtgcgcggtacaccgcgaaggcggggaacccctggacgacaaggtgagctaccaa
ccgggcgaaggcttggtgggggccatcctggacaagggcgacaccctcatcgtcgagcgc
ctcgccgaggaaccccgcttcctggggaagctcaagctctacgacccggaactgcccttc
atcggctcgcccatccatgtcggcgacaacgagatggtcggcgtcctggccgcccagccg
gtggccaacgattggctcagggatcgcgcccgcttcatggagatggtcgccaacctcatc
gcccagagcgcggggctgttgcgcagcatggagcagaagcagcgcgatttggcgatggag
cgcgaccagctcaaacagaccctgcgcaagaactaccgcttcgagaacatcatcggccac
gcccagcccatgatgcgggtattggaactggtgcggcaggtgtcgaaatggaacaccacg
gtgctgatccggggcgaatccggcacgggtaaagaggtcatcgccaacgccatccattac
aactcggcctgcgccaacgggccgttcctcaggttgaattgcgcggccctgcccgacaac
ctgttggaatcggaattgttcggccacgagaagggcgcgttcagcggcgcggtgactttg
cgcaagggccgtttcgagctggcccacaacggcaccttgttcctggacgaaatcggcgag
atttccccggcgttccaagccaaactgttgcgggtgatccaggagggcgaattcgagcgg
gtcggcggcagccagaccctcaaggtcaacgtccgcatcatcgccgccaccaaccgcgac
ctggaatacgaggtggacgaaggccggttccgcgaggatttgtattaccgcctcaacgtc
atgcccatccacctgccgcccttgcgcgagcgcttggaggatatcccggaactcgcccgc
ttcctgctggggcggatttccaagcaacaaggcgggcgacccttggaactcaaggaaagc
gccatccgcctgttgatgcgctatagctggccgggcaatgtgcgcgaactggagaaccgc
atcgaacgcgccgccatcatgagccccgatggggtgatcgaccgcgatgtgctggccctg
agcggcttcgaggacgatttgaacacgcccgcgcccaagccttcctccgccagcagcaag
gaagccaccatcgatttcaccgacgagagcttggacgagcgcgagcgggtcatcgcggcc
ctggagcaatcgggctgggtgcaggccaaggcggcgcgtttgctcaacatgacaccgcgg
cagatcgcttaccgggtgcagactttgaatatcaagatgaagcggatttaa
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