Methylomagnum ishizawai: MishRS11D_33960
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Entry
MishRS11D_33960 CDS
T07434
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MishRS11D_33960 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
misz03019
]
MishRS11D_33960 (pnp)
03016 Transfer RNA biogenesis [BR:
misz03016
]
MishRS11D_33960 (pnp)
Enzymes [BR:
misz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
MishRS11D_33960 (pnp)
Messenger RNA biogenesis [BR:
misz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MishRS11D_33960 (pnp)
Transfer RNA biogenesis [BR:
misz03016
]
Prokaryotic type
tRNA degradation factors
MishRS11D_33960 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
BBL76298
LinkDB
All DBs
Position
complement(3779530..3781608)
Genome browser
AA seq
692 aa
AA seq
DB search
MNPIRKQFKYGEHLVTFETGEIARQADAAVMVDMEGTVVLVTVVGKKEASPETDFFPLTV
NYQEKAYAAGRIPGGFFKREGRPTEKETLTARLIDRPIRPLFPDGFTHEVQVVATVLSLN
PEIDPDVPSMLGASAALTLSGMPFQGPIAAARVAYIDDQYVLNPLASDLDDSMLDLVVAG
TSKAVLMVESEAAMLPEDVMLGAVMFGHEQMQVAIDAILDLAEMVGVKSWNWTPPTPDTA
LEDAVKAQAGAAVDAAYRIADKQLRGQTVKEARKAVIEALTAEGQYSATAVRGVFEKLEY
DTVRARILDEAQRIDGRDLVTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTGRDA
QVIDAIEGEYKDPFMLHYNFPPYCVGETGNIGSPKRREIGHGRLAKRGVQAVMPDPDEFP
YVIRVVSEITESNGSSSMASVCGTSLALMDAGVPIEAPVAGIAMGLIKEGDRFAVLSDIM
GDEDHLGDMDFKVAGTRDGVTALQMDIKIDGITAEIMSKALDQAKAGRLHILGKMNQVLS
TPRKEMSDYAPRIMSFTIDPSKIRDVIGKGGATIRAITEETGASIDITDDGVVKIASVDR
EAGDEARRRIEAITAEVEVGKIYEGKVVRLMDFGAFVTILPGKDGLVHISQISDEHVEKV
SDKLAEGDVVRVKVLEIDRQGRVRLSMKAVEK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccgattcggaaacagttcaagtacggcgaacatttggtgaccttcgagaccggc
gaaatcgcgcgtcaagccgacgccgcggtcatggtcgatatggagggaacggtggtcctc
gtgaccgtggtgggcaagaaggaagcttctcccgaaaccgattttttccccctgacggtg
aattatcaggagaaggcttatgccgcggggcggattcccggcggatttttcaagcgcgaa
ggacgccccaccgagaaggaaaccctcaccgcccggttgatcgaccgtccgatacgcccg
cttttcccggacggattcacccacgaagtgcaggtggtcgccaccgtcctctccctcaat
cccgagatcgatcccgatgtgccctccatgctgggcgcgtcggcggcgctgaccctgtcc
gggatgccgttccaaggtccgatagccgcggcccgggtcgcctatatcgacgatcaatac
gtgctgaatcccctggcctccgacctggacgattccatgttggatttggtggtggccggt
acgtccaaggccgtgctgatggtggagtccgaagccgccatgctgcccgaggatgtgatg
ctgggcgcggtcatgttcggccatgagcaaatgcaggtcgccatcgacgcgatcctggat
ttggccgaaatggtcggcgtgaaatcctggaattggaccccgccgaccccggataccgcc
ttggaggatgccgtcaaggcccaggccggtgccgctgtcgatgccgcctaccgcatcgcc
gacaagcagctgcgcggccagaccgtgaaggaagcccgcaaggccgtgatcgaggcgctg
accgccgaaggccaatattccgccaccgccgtgcgcggcgtgttcgagaagctggaatac
gacaccgtgcgcgcccgcatcctcgacgaggcccagcgcatcgatggccgcgacctcgtc
accgtccgtcccatcaccatccgtaccggcgtgttgccgcgtacccatggttccgccctg
ttcacccgtggcgaaacccaggccctggtggtcgccaccttgggcacgggccgcgatgcc
caggtgatcgacgccatcgagggcgaatacaaagaccccttcatgttgcactacaacttc
ccgccctattgcgtgggcgagaccggcaacatcggctcccccaagcgccgtgaaatcggc
catggccgtctggccaagcgcggcgtgcaggcggtgatgccggacccggatgaattcccc
tacgtcatccgcgtggtgtcggaaatcaccgagtccaacggttccagttccatggcctcg
gtctgcggcaccagcttggcgctgatggacgcgggcgtgcccatcgaagccccggtggcg
ggtatcgccatgggcttgatcaaggagggcgaccgcttcgcggtgctgtccgacatcatg
ggcgacgaggaccatctgggcgatatggatttcaaggtcgcgggcacccgcgacggcgtg
accgccttgcagatggatatcaagatcgatggcatcaccgccgagatcatgagcaaggcg
ctggaccaggccaaggccgggcgcctccatatcctgggcaagatgaaccaagtcctgtcc
acgccgcgcaaggagatgtccgattacgcgccgcgtatcatgagcttcaccatcgacccc
agcaagatccgcgatgttatcggcaagggtggggccaccatccgcgccatcaccgaggag
accggggccagcatcgatatcaccgatgacggtgtggtgaagatcgcctccgtggaccgc
gaggccggcgacgaggcccgccgccggatcgaggccatcaccgccgaggtcgaggtcggc
aagatctacgaaggcaaggtggtccgtttgatggacttcggcgcgttcgtgaccatcctg
cccggcaaggacgggctggtccacatctcgcaaatctccgacgagcatgtcgagaaggtc
agcgacaaactggccgagggcgatgtggtccgggtcaaggtgctggaaatcgaccgccag
ggccgggtgcgtttgagcatgaaggccgtcgagaaataa
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