Methylomagnum ishizawai: MishRS11D_36730
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Entry
MishRS11D_36730 CDS
T07434
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MishRS11D_36730 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
misz03021
]
MishRS11D_36730 (rpoC)
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_36730 (rpoC)
Enzymes [BR:
misz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MishRS11D_36730 (rpoC)
Transcription machinery [BR:
misz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MishRS11D_36730 (rpoC)
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MishRS11D_36730 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BBL76575
LinkDB
All DBs
Position
complement(4109974..4114188)
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLINFLKRQNQTEEFDSIRISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVSDYECLCGKYKRLKHRGVICEKCGVEVTLQKVRRERMGHIELASPVAHIWFLKSL
PSRIALLLDMTLREIERVLYFESYVVIDPGMTPLIRAQLLTEEEFQQASQQHGEEFVAKM
GAEAIHEMLKTMDLQAEVSRLREEIDATNSETKIKKHTKRLKAIESLIWSENRPEWMILT
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEKESAEVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RTLMMATNNILSPANGEPIINPTQDVVLGLYFMSRERLDARGTGMIFSDVAEAQRAMQNK
VVDIQAKVQVRLKMSWLDENGEKVRGLKRVETTVGRAIIWTIVPDGIPFEMINTDMTKKN
ISRLINYCYRTLGIKATVVFADQLMYLGFSNATRAGVSFGINDMAIPKAKEDIIYLAEQE
VKEIQNQYASGLVTDGERYNKVVDIWSHANDQVAKAMMEGLGTEPVTLLDGTETHQKSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTVDGLLMSPLIEGGDVVEPLAERVL
GRVLAEDIYSPARPDEMILPAGSMLDENAVALLETHSVDNVRVRSVITCRTRYGVCASCY
GRDLGRGHKVNSGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVEVKSAGTIK
LTNLKTVENKDGNLVAVSRSGEVSVIDEHGRERERYKIPYGAVSTVRNDDRVRAGQIVVN
WDPHTHPVVTEVKGVAKLVDFIEGVTVREQSDEVTGLSSMVIIDPKQRGGMGKDLRPMVK
LVDEHGNDIRIPSTEIAAQYFLPAGAIIGITDGGPVEVGDVLARIPQESSKTRDITGGLP
RVADLFEARKTKDPAILAEASGTISFGKETKGKRRVVVTDSHGEQHEVLIPKWRHITVFE
GEHVEQGETIAEGDLTPHDILRLRGVAELSSYLVKEIQDVYRLQGVKINDKHIEVIIRQM
LRKVEITDAGDTGFLKGEQVDRSRMLEENDRVEAEGKIPACYEPVLLGITKASLSTESFI
SAASFQETTRVLTEAAIRGLSDKLLGLKENVIVGRLIPAGTGLAYHLDRKRRAKLGEGEA
EAAPTLDAGDVEEQLKQAFSTSME
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatcttattaatttcctgaagcgccagaaccagacggaagaattcgacagcatc
cgtatcagcctggcctcgcccgatatgatccgttcctggtcctttggcgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgtgacggcttgttctgcgccaag
attttcgggccggtcagcgactacgaatgcctgtgcggcaagtacaagcgcttgaagcac
cgcggtgtcatctgcgaaaaatgcggcgttgaagtcaccttgcaaaaggtccgccgcgag
cgcatgggccatatcgaattggccagcccggtcgcgcatatctggttcctgaagtcgctg
ccctcgcgcatcgccttgttgctcgacatgaccttgcgcgaaatcgagcgcgtgctgtat
ttcgagtcctatgtggtgatcgaccccggcatgaccccgctgatccgggcgcaattgctg
accgaggaggaattccagcaggccagccagcagcatggcgaggaattcgtcgccaagatg
ggcgcggaagccatccatgaaatgctcaagaccatggatttgcaggccgaggtttcccgt
ctgcgcgaggaaatcgacgcgaccaattccgaaaccaagatcaagaagcacaccaagcgc
ctcaaggccatcgagtccttgatctggtccgagaaccgccccgagtggatgatcctgacc
gtgttgccggtgttgccgccggaactgcgtcccttggtgccgctggacggtggccgcttc
gcgacttccgacctcaacgatctttaccgccgcgtcatcaaccgcaacaaccgtttgaag
cggctgctggacctgaacgcgccggacatcatcgtccgcaacgaaaagcgcatgttgcag
gaagcggtggacgcgctgttggataacggtcgccgtggccgcgccatcaccggctccaac
aagcgcccgcttaagtcgctggccgatatgatcaagggcaaacagggccgtttccgccag
aacctcttgggcaagcgcgtggactactccggtcgttcggtgatcgtggtggggccgacc
ttgaagctgcaccagtgcggcctgcccaagaagatggcgctggaattgttcaagccgttc
atcttcagcaagctgcaattccgcggcctcgcgacgaccatcaaggccgccaagaagatg
gtggagaaggaaagcgcggaagtttgggacatcttggacgaggtgatccgcgaacatccg
gtgatgctgaaccgcgctccgaccctgcaccgtctgggtatccaggcgttcgagccgacc
ctggtcgaaggcaaggccatccagttgcatcccttggtctgtaccgctttcaacgccgac
ttcgacggcgaccagatggcggtacacgtccccttgtcgctggaagcgcagttggaagcc
cgcaccttgatgatggcgaccaacaacatcctgtccccggccaacggcgaacccatcatc
aacccgacccaggacgtggtgctgggtttgtacttcatgagccgcgagcggttggatgcc
aggggcaccggcatgatcttctccgacgtggccgaagcccaacgcgccatgcagaacaag
gtggtcgatatccaggccaaggtgcaggtgcgcctcaagatgagctggctcgacgagaac
ggcgaaaaggtccggggcttgaagcgggtcgaaaccacggtgggccgcgccatcatctgg
accatcgtcccggacgggattccgttcgagatgatcaacaccgacatgaccaagaagaac
atctccaggctcatcaattactgctaccgcaccctgggcatcaaggccacggtggtgttc
gcggaccaattgatgtacctgggattctccaatgcgacccgcgccggggtgtctttcggc
atcaacgacatggcgattcccaaggccaaggaagacatcatctaccttgccgagcaggag
gtgaaggaaatccagaaccagtacgcttccggccttgtgaccgatggcgagcgctataac
aaggtcgtggatatctggtcgcacgccaacgatcaggtggcgaaggcgatgatggaaggt
ttgggtaccgagccggtaactttgctcgatggcaccgaaacccaccagaaatcgttcaac
tccatcttcatgatggccgactccggggcgcgtggttccgccgcccagatccgccagctg
gccgggatgcgcggcctgatggccaagccggacggctccatcatcgaaaccccgatcacc
gcgaatttccgcgaaggtctggacgtgttgcagtacttcatttccacccacggcgcccgg
aagggcttggccgacacggcgttgaagaccgccaactcgggatatctgacccgccgcctg
gtggacgtggcccaggacttggtcatcaccgaggacgattgcggcaccgtcgatggcttg
ttgatgtcgcccttgatcgaaggcggcgacgtggtcgagcctttggccgagcgcgtactg
ggccgggtgctggccgaggacatctatagtccggcccgccccgatgaaatgattttgccc
gcgggttccatgctggacgaaaacgccgtggccctgttggaaacccacagcgtggacaat
gtccgggtgcgttcggtgattacctgccggacccgctacggcgtgtgcgcctcctgctac
gggcgcgacctgggccggggccacaaggtcaatagcggcgaggccatcggcgtcatcgcg
gcccagtccatcggcgagccgggcacccagctcaccatgcgcaccttccacatcggcggc
gcggcctcgcgttccgccgccatcagcaatgtggaagtgaaatcggcgggcaccatcaag
ctgaccaacctcaagaccgtggagaacaaggatggcaacctggtcgccgtctcccgttcc
ggcgaggtcagcgtgatcgacgaacatggccgcgagcgcgagcgctacaagattccctac
ggcgctgtgtcgaccgtgcgtaacgatgaccgggtccgggccggccaaatcgtggtcaac
tgggacccgcatacccatccggtggtcaccgaggtgaagggcgtcgccaaattggtggat
ttcatcgagggcgtgaccgtgcgcgagcaatcggacgaggtgaccggcctgagttcgatg
gtgatcatcgacccgaaacagcgcggcggcatgggtaaggatttacgccccatggtcaag
ctggtggacgaacacggcaacgatatccgcatcccgtccaccgaaatcgccgcccaatat
ttcctcccggccggcgcgatcatcggtatcaccgacggcggcccggtggaggtcggcgac
gtgttggcgaggattccgcaagaatccagcaagacccgcgacatcaccggcggtctgccc
cgggtggccgatttgttcgaggcccgcaagaccaaggacccggcgatcctggcggaagct
tccggcaccatcagcttcggcaaggaaaccaagggcaagcgccgcgtggtcgtcaccgac
agccacggcgagcagcacgaggtgttgatcccgaaatggcggcacatcaccgtgttcgag
ggcgagcatgtcgagcagggcgaaaccatcgccgagggcgatctgaccccgcacgatatc
ctgcgccttaggggcgtcgcggagctttcgtcctatctggtcaaggaaatccaggacgtt
taccggctgcaaggcgtgaagatcaacgataagcatatcgaggtcatcatccgccagatg
ctgcgcaaggtggaaatcaccgacgcgggcgacaccggcttcctcaagggcgagcaggtg
gaccgctcccgtatgctggaggagaacgaccgggtcgaggccgagggcaagattccggcc
tgctacgagccggtgctgctgggtatcaccaaggcgtcgttgtccaccgaatccttcatc
tcggcggcttcgttccaggaaaccacccgcgtcctcaccgaggcggcgatccgcggcctc
agcgacaagctgttggggctcaaggaaaacgtcatcgtgggtcgcttgatcccggcgggc
accggcctcgcctaccacctggaccgcaagcgccgggccaagctgggcgagggcgaagcc
gaggccgcgccgaccctcgacgccggcgatgtcgaggagcagttgaagcaagccttcagc
accagcatggaatga
DBGET
integrated database retrieval system
