Mycobacterium intracellulare MOTT-02: OCO_10480
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Entry
OCO_10480 CDS
T01754
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCO_10480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_10480
Enzymes [BR:
mit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OCO_10480
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OCO_10480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFC47412
LinkDB
All DBs
Position
1039937..1043593
Genome browser
AA seq
1218 aa
AA seq
DB search
MEFIMTAPGAARPETPIAGLVELALTAPTFQQLIDSAAASPAELHLVGPASARLFVASAL
ARLGPLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGVDTVGARLTVLR
RLAHPDDARLGPPLQVVVTAARSLLQPMTPQLGLIEPVTLSVGAEVEFEGVIARLVELAY
TRVDMVGRRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIEVDT
LIAVPCRELLLTEEVRQRAAELSARHPATEPAITGSVTDMLAKLAEGIAVDGMEALLPVL
RPGEHVLLTDQLAQGTPILLCDPEKIRTRAADLIKTGSEFLEASWSAAAMGTDAPVDVAQ
FGGSGFAELDDVQAAAAKGGHPWWTLSQLSDESAVELDIRAAPSARGHQHDIDGIFAMLR
AHVTTGGYAVVVAPGAGTAHRVVERLAECDTPAAMLESGAAPKLGVVGVLKGPLHDGVII
PGATLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALAAGDLVVHDQHGIGRFVEMVE
RTVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTK
TKARRAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGYTETVDQLTAITEVKG
DMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMT
GFPVTVKGLSRFTDPAESKAVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRF
GVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHD
DKQVAAALRRELLRDGQVFYVHNRVSSIDRTAAKIRELVPEARVVVAHGQMPEERLERTV
QGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYF
LYPPHAPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDL
YVRLVGEAVEAYRAAADGHTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLAA
AASDGEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPMT
LPDSAQVRLKRMYPAAGYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGKA
QTDIGITSSPAAMTSEGR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaattcatcatgaccgcaccgggggctgctcgcccagaaaccccgatcgcggggctc
gttgaattggcgctcaccgcgccgaccttccagcagctgatcgacagcgcggccgcgtcg
ccggccgaattgcacctggtgggtccagccagcgcacggttgttcgtggccagcgcgctg
gcgcggttgggtcctttgctggtagtcaccgcgaccgggcgcgaagccgacgacctgacc
gctgaactgcgcggcgtcttcggcgatgccgtcgcggtcttcccgtcctgggagacgctg
ccgcacgagcggctctcgcccggcgtcgacaccgtcggcgcccgcctgaccgtgctgcgg
cgcctggcccaccccgacgacgcgcggctgggccctccccttcaggtcgtggtcaccgcg
gcccgctcgctgctgcagccgatgacaccgcagctcggcctgatcgagccggtcacattg
agcgtcggtgcggaagtcgaattcgagggcgtgatcgcccggctggtcgaactggcctac
acccgggtcgacatggtgggccggcgcggcgagttcgccgtgcgcggcgggattctcgac
gtcttcccgccgacggccgagcacccggtgcgcatcgagttctggggtgacgaggtcagc
gagatgcgcatgttctccgtcgccgatcagcgttcgatcccggagatcgaggtcgacacc
ctgatcgcggtgccctgccgcgagctgctgctcacggaggaggtgcggcaacgggccgcc
gagctgtccgcgcggcacccggcgaccgagcccgcgatcaccggcagcgtcaccgacatg
ctggccaagctcgccgagggcatcgcggtcgacggcatggaggccctgctgcccgtgctg
cggcccggcgagcacgtgctgctgaccgaccaactggcgcagggcaccccgatcctgttg
tgcgaccccgagaagatccgcacccgcgccgccgacctgatcaagaccggcagcgaattc
ctcgaagcctcgtggtcggcggccgccatgggcacggacgcccccgtcgatgtcgcgcaa
ttcggcggatcgggattcgccgagctggatgacgtgcaggccgcggccgccaaaggcggg
catccgtggtggacgctgagccagttgtccgacgagtcggccgtcgagctggacatccgg
gcggcgccctcggcgcgcggccatcagcacgacatcgacggcatcttcgcgatgctgcgc
gcgcacgtcaccaccggcggctacgccgtcgtcgtcgcccccggcgccggcaccgcgcac
cgcgtggtggaacggctcgccgaatgcgacaccccggccgccatgctggaatcgggcgcc
gcgcccaagctcggggtggtcggcgtgctcaagggcccgctgcacgacggcgtcatcatt
cccggcgccacgttggtggtgatcaccgagaccgacctcacgggcagccgggtcgccgcc
gtcgagggcaagcgcctggcggccaagcggcgcaacaccgttgacccgttggccctggcc
gccggcgatctggtggtgcacgatcagcacggcatcgggcggttcgtggagatggtcgag
cgcaccgtgggcggcgcccgccgcgagtacctggtgctcgaatacgcctcgagtaaaagg
ggtggtggatccgacaagctttatgtcccaatggattcgctggatcagctgtcgcggtac
gtcggtgggcaggcgccggcgctgagcaagctcggcggcagcgactgggccaacaccaag
accaaggcgcgccgcgcggtgcgcgagatcgccggcgagctggtgtccctgtacgccaag
cgacaggccagccccgggcacgcgttcggcccggacaccccgtggcaggccgagatggaa
gacgcgttcgggtacaccgagaccgtcgaccagctgaccgcgatcaccgaggtcaagggg
gacatggaaaagccgatccccatggaccgggtgatctgtggcgacgtgggctacggcaag
accgagatcgcggtgcgggcggcgttcaaggcggtccaggacggcaagcaggtggccgtg
ctggtgcccaccacgctgctggccgaccagcacctgcagaccttcaccgaccggatgacc
gggttcccggtgaccgtcaagggcctgtcccggttcaccgaccccgcggagtccaaggcc
gtgatcgagggcctggccgacgggtcggtggacgtggtgatcggcacgcaccggctgttg
cagacgggggtgcgctggaaggacctcggcctcgtcgtcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcacatcaagtcgctgcgcacccacgtcgacgtgctgaccatg
agcgccaccccgatcccacgcacgctggagatgagcctggccgggatccgcgagatgtcg
acgatcctgaccccgcccgaggagcgctacccggtgctgacctacgtcggcccgcacgac
gacaagcaggtcgcggccgccttgcgccgcgagctgctgcgcgatgggcaggtcttctac
gtgcacaaccgggtcagctccatcgaccggacggcggcgaagatccgggagctggtgccc
gaggcgcgggtggtcgtcgcgcacgggcagatgcccgaagaacggctggaacgcacggtg
caggggttctggaaccgcgaatacgacatcctggtgtgcaccacgatcgtggagaccggg
ctggacatctccaacgccaacacgctgatcgtcgagcgcgccgacaccttcggcctgtcg
cagctgcaccagctgcgcggccgggtcggtcgcagccgggagcgcggctacgcctacttc
ctgtatccgccgcatgcgccgctgaccgagaccgcctacgaccggctggccaccatcgcg
cagaacaacgagctcggcgcgggcatggctgtcgcgatgaaggacctcgagatccgcggc
gccggaaacgtgttgggcgtcgagcagtccgggcacgtcgccggcgtcggcttcgacctg
tacgtccgcctggtgggcgaggccgtggaggcctaccgcgcggctgccgacggccacacc
gtcacgacggccgaggagccgaaggacgtgcgcatcgacctgccggtcgatgcgcacctg
ccgccggactacatcgccagcgaccggctgcggctcgaggcgtaccgccggctggccgcg
gcggcctccgacggcgagatcgacgcggtcgtggaggaactcgtcgaccgctacggcgcg
ctgcccgagccggccctgcggctggtggcggtggcccggctgcggctgctgtgccgcgcc
gcgggcatcaccgaggtgtcggcgccctcagcggccaccgtgcggctctcgccgatgacg
ctgccggattcggcgcaggtgcggctcaagcggatgtatccggcggcgggctaccgcgcc
acgacctccaccgtgcaggttcccatcccgcgcgccggcggcgtcggcgcgccgcggctg
cgcgatgtcgagctggtgcagatggtggccaacctggtgacggcattgcagggcaaggcg
cagacggatattggtataacgagttcacctgcggcgatgacgagtgaggggcgctaa
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