Mycobacterium intracellulare MOTT-02: OCO_15760
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Entry
OCO_15760 CDS
T01754
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCO_15760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mit03021
]
OCO_15760
03019 Messenger RNA biogenesis [BR:
mit03019
]
OCO_15760
Transcription machinery [BR:
mit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OCO_15760
Messenger RNA biogenesis [BR:
mit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OCO_15760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Fungal_virus_P2_C
DUF7440
VWA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AFC47939
LinkDB
All DBs
Position
1585914..1587719
Genome browser
AA seq
601 aa
AA seq
DB search
MTTDTPDAKTNASAGALSTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGVP
ANGTKSTEDSGKPDTKDDDTKDTKDDNGADAPAAKEGQNGAAPTEAPRRERRGASRDAGS
TDRANEDADRERAGGRDGGATGETDGREGKQDKDNQNENRGQGGGSEDQQGSGGQQGRGG
SNQQDDDGEGRGGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVR
TSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKEGEQPNQRQKFNPLVRLDSVNGG
SVEDAKKRPDFSKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKT
TILQDIANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPSDHTQAAEL
AIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAAR
NIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGT
RKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKTTPGMDN
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgacactcccgacgcgaagacgaacgcttcggccggcgccctgtccaccatg
gtgctgcccgagctacgcgcgctggctaaccaggtcggcgtcaaagggacgtcgggaatg
cgtaagaacgaactgatcgccgcgatcaaagaagtcaggggacaggccaacggcgtgccc
gccaacggcacgaagtccactgaggacagcggcaagccggacaccaaagacgacgacacc
aaagacaccaaggacgacaacggcgctgacgcaccggcggccaaggaaggccagaacggc
gcggcccccaccgaggcgccccgccgcgaacgacgcggcgcttcccgcgacgcgggatcg
accgaccgcgccaacgaggatgccgatcgcgagcgcgccggcggccgagatggcggcgcc
accggcgagaccgacggccgcgaaggcaagcaggacaaagacaaccagaacgagaaccgc
ggccagggtggcgggagcgaggatcaacagggctccggcggccagcagggccgtggcggg
tcgaaccagcaggacgacgacggcgaaggacgcggcggccggcggggacgccgcttccgc
gaccgccggcgccggggcgagcgctccggagagggcggcgacgccgaactgcgcgaggac
gacgtcgtccagccggtagccggcattcttgacgtcctcgacaattacgcgttcgtgcgc
acctccggctacctggccgggccccatgacgtttacgtgtcgatgaacatggtgcgcaag
aacggcctgcgccgcggtgacgccgtcaccggcgcggtgcgcgtgccgaaggaaggcgag
cagcccaaccagcggcagaagttcaacccgctggtacgcctggacagcgtcaacggcggc
tcggtcgaggacgccaagaagcgccccgatttctccaagctgacgccgctgtatcccaac
cagcgtcttcgcctggaaaccacgcccgaccggctgaccacgcgggtcatcgacctgatc
atgccgatcgggaagggccagcgtgcgctgatcgtgtcgccgcccaaggcgggtaagacg
acgatcctgcaggacatcgccaacgcgatcaccaagaacaacccggaatgccacctcatg
gtcgtgctcgtcgacgagcggcccgaggaggtcaccgacatgcagcgttcggtcaagggt
gaggtcatctcctcgaccttcgaccggccgccgtccgatcacacccaggccgccgagctg
gccatcgagcgggccaagcggctcgtcgagcagggcaaggacgtcgtcgtgctgctggac
tcgatcacacgcctcgggcgcgcctacaacaacgcctcgccggcgtcgggccgcatcctg
tccggtggtgtcgactccaccgcgctgtacccgcccaagcgcttcctgggcgccgcgcgc
aacatcgaggagggcggctcgctgaccatcatcgccaccgcgatggtcgagacggggtcc
accggtgacacggtcatcttcgaggagttcaagggcaccggtaacgccgagctcaagctg
gaccgcaagatctccgaacgccgggtcttcccggcggtcgacgtgaacccctccggcacc
cgtaaggacgaactgctgctgtcgccggacgagttcggcatcgtgcacaagctgcgccgc
gtgctgtcgggcctggattcccaccaggccatcgacctgctgatgtcgcagctgcgcaag
acgaagaccaactacgagttcctggtccaggtgtccaagacgacgcccgggatggacaac
gactag
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