Mycobacterium intracellulare MOTT-02: OCO_16000
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Entry
OCO_16000 CDS
T01754
Name
(GenBank) transcriptional regulator, AraC family protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OCO_16000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mit03000
]
OCO_16000
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_16000
Enzymes [BR:
mit01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
OCO_16000
Transcription factors [BR:
mit03000
]
Prokaryotic type
Helix-turn-helix
AraC family
OCO_16000
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OCO_16000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AFC47963
LinkDB
All DBs
Position
complement(1613161..1614648)
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AA seq
495 aa
AA seq
DB search
MHDDFDRCYRAVQSKDARFDGWFVTAVLTTRIYCRPSCPVRPPFARNVRFYPTAAAAQRA
GFRACKRCRPDASPGSPEWNVRGDVVARTMRLIADGTVDRDGVGGLAAHLGYTTRQLERL
LQAEVGAGPLALARAQRAQTARVLIETTDLPFGDVAFAAGFSSIRQFNDTVRSVFEGTPS
TLRRRAAARTASEANSPGTVCLRLPVRTPFAYEGVFGHLAAGAVPGCEEVRDGGYRRSLR
LPFGNAIVTLTPAVDHVRCVLVLDDFRDLTTAIARCRRLLDLDADPEAVDEALGADAGLR
PVVAKAPGQRIPRTVDEAELAVRAVLGQQVSTRAASTHAGRLVAAYGRPVNDAEGTLTHT
FPSVEELAEIDPVHLAVPKARRRTLSALVAGLADGSIVLDTGCDWDSARRQLLALPGVGP
WTAEVIAMRGLGDPDAFPASDLGLRLAAKQLGLPSDERSLVERCARWRPWRSYATQYLWT
TLEHPVNHWPPQEVA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgcacgacgatttcgaccgctgctaccgcgccgtccagtccaaggacgcccggttcgac
ggctggttcgtcaccgcggtgctgaccacccggatctactgccggcccagctgcccggtg
cggccgccgttcgcccgcaacgtgcggttctaccccaccgcggcggccgcccagcgggcc
ggctttcgggcctgcaaacggtgccgtcccgatgcctctccgggttcccccgaatggaac
gtgcgcggtgacgtggtggcgcgcacgatgcggctgattgccgacggtaccgtggaccgc
gacggtgtgggtggtctggccgcccacctcggttacaccactcgccagctcgaacggctc
ctgcaggccgaggtcggcgccggccccctggcactggcccgggcgcagcgcgcccagacc
gcccgcgtgttgatcgagacgacggacctgccgttcggcgacgtcgcattcgccgcgggc
ttttccagcatccgtcagttcaacgacaccgtgcgatcggtgttcgaaggcacaccgagc
accctgcgccggcgcgcggccgcccgtaccgcgtccgaggccaattcgcctggcaccgtg
tgccttcggctcccggtgcgcacaccattcgcctacgagggcgtcttcggccatctcgcg
gccggcgccgttcccggttgcgaggaggtccgcgatggcgggtaccgacgcagcttgcgc
cttccgttcggcaacgccatcgtgaccctgacgcccgccgtcgaccatgtccgttgcgtc
ctcgtgctcgacgatttccgcgatctgaccacggcgatcgcccgctgccggcggctgctg
gacctcgacgcggacccggaggcggtcgacgaagcgctgggcgcggacgccgggctgcga
cccgtcgtggccaaggcgcccgggcagcgcattccgcgcaccgtcgacgaagccgaactc
gcggtgcgcgcagtgctcgggcagcaggtgtcgaccagggccgcgagcacccatgccggc
cggctggtcgccgcgtacggacggccggtcaacgacgccgagggaacgttgacccacacc
ttcccctcggtcgaggagctcgccgagatcgatcccgtccatctggcggtgcccaaggcc
cgccgccgcacgctgagcgcattggttgccggcctcgccgacggcagcatcgtgctggac
accggatgcgactgggacagtgcccgcagacagttgctcgcgctgcccggggtgggcccc
tggaccgcggaagtgatcgcgatgcgcggccttggcgaccccgacgccttccccgccagc
gacctcgggctgcgcctggccgccaaacagctgggattgccgtccgacgaacgctccctc
gtggaacgctgcgcccgttggcgcccctggcgttcctatgccacccaatatctttggacc
actctcgagcatcccgtaaaccattggccgccacaggaggtcgcatga
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