Mycobacterium intracellulare MOTT-02: OCO_27980
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Entry
OCO_27980 CDS
T01754
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
mit
Mycobacterium intracellulare MOTT-02
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mit03021
]
OCO_27980
Transcription machinery [BR:
mit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OCO_27980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_3
HTH_23
Sigma70_ECF
HTH_Crp_2
MarR_2
MarR
HTH_24
DUF7343
GerE
DUF1492
DUF134
HTH_Tnp_4
KORA
LacI
HTH_Tnp_ISL3
HTH_7
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AFC49161
LinkDB
All DBs
Position
2923893..2924714
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AA seq
273 aa
AA seq
DB search
MRGTMTHTIAPTRPASAPARQSDDSYDDVVDMFVALHRMPAESHEYARQREYIVARCLPL
ADHVASHFARRGEGLEDLIQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDY
SWGMRVPRRLRELHVQISRATADLAQQLGRAPNAGELSQMLEVPREEIVECLVAGDAYRL
DSLDAPLGADSSGTPRSVADSVGDIDPQIEHITNREALRALVATLPPRERDVLRMRFFES
MTQSQIAERIGVSQMQVSRILANTLRCLRDQLE
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcggcacgatgacccacacgattgccccaacccgtcccgcttcggcgcccgccaga
caatccgacgattcatacgacgacgtagtcgacatgttcgtggcgctgcatcgcatgccg
gccgagtcgcacgagtacgcccgccagcgcgaatacatcgtcgcccgctgcctgccgctg
gccgaccacgtggccagccacttcgcccgccggggcgagggtctcgaggacttgattcag
gtcgcgcgcctgggcttgatgaacgccgtcaaccggttcgaccctgcgaagggccccagc
ttcatcggtttcgccgtccccaccatgatgggcgaggtccggcgttatttccgcgactac
agctgggggatgcgtgtcccgcggcggttgcgcgaactgcacgtgcagatcagcagggcg
accgccgatctcgcccagcagctcgggcgcgcacccaacgcgggcgaactgtcgcagatg
ctcgaggttccgcgggaggagatcgtcgaatgcctcgtcgccggcgatgcctaccggctc
gattccctcgacgcaccgctgggcgccgatagttccggaacgccgcgctcggtggccgac
tcggtgggcgacatcgatccgcagatcgagcacatcaccaaccgcgaggcgctgcgggcc
ctcgttgccaccctgccgccacgcgaacgcgacgtcttgcgcatgcggttcttcgagtcg
atgacgcaaagccagatcgcggagcggatcggggtgtcgcagatgcaggtctcgcgcatc
ctggcaaacacgctgcgctgcctgcgcgaccaactcgagtag
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