Mycobacterium intracellulare MOTT-02: OCO_29830
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Entry
OCO_29830 CDS
T01754
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OCO_29830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_29830
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OCO_29830
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OCO_29830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_22
AAA_16
AAA_19
AAA_5
AAA_30
DUF87
Glyco_trans_4_4
NAT10_TcmA_helicase
HEM4
AIG1
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AFC49346
LinkDB
All DBs
Position
complement(3164767..3166944)
Genome browser
AA seq
725 aa
AA seq
DB search
MAFATEHPVVAHSEYRPAEEAVAGLVRAGGRFEVVSPHDPAGDQPAAIDELERRIRAGER
DVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYY
DYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQS
YLDRSVELRVGNEVPRDGLLRLLVDVQYTRNDLSFTRGSFRVRGDTVEIIPSYEELAVRI
EFFGDEIEALYYLHPLTGDVIRQVDSLRIFPATHYVAGPERMAHAISTIEEELAARLAEL
EGQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDARGPGSPPATLLDYFPEDFL
MVIDESHVTVPQIGGMYEGDMSRKRNLVEYGFRLPSACDNRPLTWEEFADRVGQTVYLSA
TPGPYELSQSGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIGEIRKRTDADQRVLVTTL
TKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPE
VSLVAILDADKEGFLRSSRSLIQTIGRAARNVSGEVHMYADTITDSMKEAIDETERRRAK
QIAYNEANGIDPQPLRKKIADILDQVYREASDTEASVVEIGGSGRNASRGRRAQGEPGRA
VSAGVFEGRDTTSMPRAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKKELRGMD
AAGLK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcattcgccacggaacatccggtagtcgctcattcggaatatcgcccggccgaagag
gccgtggcggggctggtgcgcgccggcggccgcttcgaggtcgtcagcccgcacgacccc
gccggggaccagccggcggccatcgacgagctggagcgcaggatcagggcgggggagcgc
gatgtggtgctgctcggcgccaccggcaccgggaagtcggccaccaccgcttggctcatc
gagcgcctgcagcggcccaccctggtgatggcacccaacaagacgctggccgcccagctg
gccaacgagctgcgggagatgttgccgcacaacgccgttgagtacttcgtgtcgtactac
gactactaccagcccgaggcctacatcgcgcagaccgacacctacatcgaaaaggacagc
tcgatcaacgacgacgtcgagcgcttgcggcactccgcgacgtcgtcgctgctgtcgcgg
cgcgatgtggtcgtggtggcgtcggtgtcgtgcatctacggcctgggcaccccgcagtcg
tacctggatcgctcggtggaactgcgggtcggcaacgaggtgccccgggacgggttgctg
cggctactggtcgacgtccagtacacccgcaacgacctgtccttcacccgcggctcgttc
cgggtgcgcggcgacaccgtggagatcatcccgtcctacgaagaactggcggtgcgcatc
gagttcttcggcgacgagatcgaggcgctgtattacctgcacccgctgacgggcgacgtg
atccgccaggtcgactcgctgcgcatcttcccggccacccactacgtggccggccccgag
cggatggcccacgccatctcgacgatcgaagaggaactggccgcccggctggccgaactc
gagggccagggcaagctgctcgaggcgcagcgcctgaggatgcgcaccaactacgacatc
gagatgatgcgccaggtcggattctgttcgggcatcgagaactactcccgccacatcgac
gcccgggggccgggctcgccgccggcgaccctgctcgactactttccggaagactttttg
atggtcatcgacgagtcgcacgtcaccgtgccgcagatcggcggcatgtacgagggcgac
atgtcgcgcaagcgcaacctggtcgaatacgggttccggttgccgtcggcgtgcgataac
cgcccgctgacgtgggaggagttcgccgaccgggtcgggcagacggtgtatctgtcggcc
accccgggcccctatgagctcagtcagtccggcggcgagttcgtcgagcaggtcatccgg
cccaccggcctggtggacccgaaggtggtggtcaaaccgaccaaggggcagatcgacgac
ctgatcggcgagatccgcaagcgcaccgacgccgaccagcgggtgctggtcaccacgctc
accaagaagatggccgaggacctcaccgactacctgctcgagatgggcatccgggtgcgc
tatctgcactcggaggtcgacacgctgcgccgggtggaattgctgcgccagctgcggctc
ggcgagtacgacgtgctggtcggcatcaacctgctgcgcgagggcctggacctgccggag
gtgtcgctcgtcgccatcctggatgccgacaaagagggcttcctgcggtcatcgcgcagc
ctgatccaaaccatcggccgcgccgcccgcaacgtctccggcgaagtgcacatgtacgcc
gacacgatcaccgactcgatgaaggaagccatcgacgagaccgaacggcgccgggcgaag
cagatcgcctacaacgaggccaacgggatcgacccgcaaccgctgcgcaagaagatcgcc
gacatcctcgaccaggtctatcgcgaggcgtctgatacagaagccagcgtggtggagatc
ggcgggtcagggcgcaatgcgtcccgcggtcggcgcgcacagggcgagccgggccgcgcg
gtcagcgccggggtgttcgagggccgcgacacgaccagcatgccccgcgccgaactggcc
gacctgatcaaggacctgaccgcgcagatgatggccgccgcccgggacttgcaattcgag
ctggccgcgcggttccgggacgagatcgccgacctgaagaaggaactgcgcgggatggac
gccgccggcctgaaatga
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