Mycobacterium intracellulare MOTT-02: OCO_29900
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Entry
OCO_29900 CDS
T01754
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCO_29900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_29900
Enzymes [BR:
mit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCO_29900
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCO_29900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Alpha_TIF
Motif
Other DBs
NCBI-ProteinID:
AFC49353
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All DBs
Position
3174519..3175409
Genome browser
AA seq
296 aa
AA seq
DB search
MARVDVEITHPDRVLFPADGITKRDLAAYYDQVADTMLAHLRGRALNVQRYPRGIAETGF
IQQDFADSLPDWMSSVRVPKEGGTVEHPVVERPEALRWLANQSCITLHMWQSRRARLDHP
DRLVFDLDPADGDFAVVRATARATAGVLGDLGLACYVQTTGSRGLHVVTPLRADADFDTA
RQFARDVSEVVAADDPAHRTVEARKDKRDGRVYLDIMRNAYAQTAVAPYSVRARNGAPVA
TPLEWDELDAGRLRADRFTIRDVPKRLAGQPDPWAHMSRHARSLAGPLRRLARLRA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgtcgacgtcgagatcacccacccggaccgcgtcctgtttcccgccgacggg
atcaccaaacgcgatctcgccgcctactacgaccaggtggccgacaccatgctggcgcac
ctgcggggccgggccctcaacgtgcagcgctatccccgaggcatcgccgaaacagggttc
atccagcaggatttcgccgattcgctaccagactggatgagcagtgtccgggtgcccaag
gagggcggcaccgtagagcatccggtcgtcgaacggccggaggcgctgcgctggctggcc
aatcaaagctgcatcaccctgcacatgtggcagtcgcgccgggcccggctggaccacccg
gaccggctcgtcttcgatctcgacccggccgacggcgacttcgccgtggtgcgagcgacc
gcacgcgccaccgccggggtgctcggggacctgggcttggcgtgctacgtccagaccacc
ggctcgcgcgggctgcacgtcgtgactcccttgcgcgccgacgccgatttcgacaccgcc
cggcagttcgcccgcgacgtcagcgaagtggtcgccgcggacgatcccgcgcatcgcacc
gtcgaggctcgcaaggacaagcgcgacgggcgggtatacctcgacatcatgcgaaacgcc
tacgcgcagacggcggttgcgccgtattcggttcgggcccgcaacggcgcaccggtagcc
acaccactggaatgggacgagctggacgccgggcggttgcgggccgatcggttcaccatc
cgagacgtgcccaaacggcttgccggacaaccggatccgtgggcgcacatgtcgcggcac
gcccgctcgctggccggcccgctgcggcgattggcgaggctacgtgcctga
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