Mycobacterium intracellulare MOTT-02: OCO_43950
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Entry
OCO_43950 CDS
T01754
Name
(GenBank) DNA-directed RNA polymerase subunit beta protein
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mit
Mycobacterium intracellulare MOTT-02
Pathway
mit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OCO_43950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mit03021
]
OCO_43950
03400 DNA repair and recombination proteins [BR:
mit03400
]
OCO_43950
Enzymes [BR:
mit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OCO_43950
Transcription machinery [BR:
mit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OCO_43950
DNA repair and recombination proteins [BR:
mit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OCO_43950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF496
Motif
Other DBs
NCBI-ProteinID:
AFC50758
LinkDB
All DBs
Position
complement(4617406..4621356)
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAIEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL
YRELIDRFGEYFTGAMGAESIQKLIENFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVDAALGEFK
PAAKDEPEVGVYSSPAEAIMASDRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD
AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGKVVVARGEDLGDPEIEALLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEEGERFYKITIVPDDGSEEVVYDKL
SKRQRLRVFKHEDGSERVLSDNDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgaactccggatcggtctggccaccgcggaggacatc
aggcaatggtcttacggcgaggtcaagaagccggagacgatcaactaccgcacgctgaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgacccgcgccaaggtgcgtcgcgagcggatgggccacatcgaactggccgcgccc
gtcacgcacatctggtacttcaagggcgtgccgtcgcggctggggtacctgctcgacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcctacgtcatcacctcggtcgac
gaggagatgcgccacaacgagctctcgacgctcgaggccgaaatgatggtggagcgcaag
gccatcgaggatcagcgcgacgccgacctggaggcccgcgcccagaagctcgaggccgac
ctggctgagctggaggccgagggcgccaaggcggacgcgcgccgcaaggtccgcgacggc
ggcgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggatcggctcgag
gagatctggacgaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
taccgcgagctgatcgaccgcttcggtgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctgatcgagaacttcgacatcgacgccgaggccgagatcctgcgcgacgtc
atccggaacggcaaggggcagaagaaacttcgcgccctgaagcggctcaaggtggtcgcc
gccttccagcagtcgggcaactcgccgatgggcatggtgctcgacgccgtcccggtgatc
ccgccggaactgcgcccgatggtccagctcgacggtggccggttcgccaccagcgacctc
aatgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgttgcaggagtccgtggacgcg
ttgttcgacaacggccgtcgcggccgcccggtcaccggacccggtaaccgcccgctgaag
tcgctgtccgatctgctcaagggtaagcagggccggttccgtcagaacctgctcggcaag
cgtgtcgactactcgggccgcagcgtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtggagcgccagcgt
ccccaggtgtgggatgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccggctgggtatccaggccttcgagccgatgctggtggaaggcaag
gcaattcagctgcacccgctggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgtcgcccgcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccgggctgtactacctgaccaccgaggtcgacgccgccttgggcgaattcaag
cccgccgccaaggacgagcccgaggtcggggtgtactcctcgccggccgaggcgatcatg
gcgtccgaccgtggcgtgctgtcggtgcgggccaagatcaaggtgcggctgacccagctg
cgcccgcccgccgagatcgaggccgagctgttcggcgccaacggctggcagccgggggac
gcctggatggccgaaaccacgctgggccgggtgctgttcaacgagctgctgccggtgggc
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggccgccatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggacgccggt
ttctactgggcgacccgcagcggtgtcaccgtgtcgatggccgacgtgctcgtgccgccg
cgcaagaaggagatcctcgaccagtacgaggagcgggccgaaaaggtcgaaaagcagttc
cagcgtggcgctttgaaccacgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtcggtcaggcgctgcgtgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggtgccacgggtaacttcacccagacccggacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccgcgtccggtcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacccacggcgcccgaaagggcttg
gcggacaccgcgttgcgtaccgccgactccgggtacctgacccgtcgtctggtggacgtg
agccaggacgtcatcgtccgcgagcacgactgcgagaccgagcggggcatcgtcgtcgag
ctggccgagcgtcagcccgacggcaccctgatccgcgacccgtacatcgaaacctcggcg
tatgcacggactttgggcaccgacgcggtcgacgaggccggcaaggtcgtcgtcgctcgc
ggcgaggacctgggtgacccggagatcgaggccctgctggcggccggcatcacgcaggtc
aaggtgcgctcggtgctgacgtgcaccaccggcaccggggtgtgcgcgacctgttacggg
cggtccatggccaccggaaagctggtcgacatcggcgaggccgtcggtatcgtcgcggcc
cagtccatcggtgagcccggtacgcagctgaccatgcggacgttccaccagggtggtgtc
ggtgaggacatcaccggcggtctgccccgggtccaggagctgttcgaggcccgcatcccg
cgcggcaaggcgccgatcgccgacgtcaccgggcgggtccgcctcgaggagggcgagcgc
ttctacaagatcaccatcgttcccgacgacgggagcgaggaggtcgtgtacgacaagctc
tccaagcggcagcggctgcgcgtgttcaagcacgaagacggttccgagcgggtgctctcc
gacaacgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgcgtgcagggcccccgcgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgcgcgcagggtgtgtcgatccacgacaagcacatcgaggtgatcgttcgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagtttttgcccggctcgctg
atcgaccgcgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcacgaaggcgagcctcgccaccgactcgtgg
ctgagcgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggcatcaaccgctaccgcaacatccaggtgcagccgaccgaggaggcccgggcc
gccgcgtacacgatcccgtcctacgaggatcagtactacagcccggacttcggccaggcc
accggcgccgcggttccgttggacgactacggctacagcgactaccggtag
DBGET
integrated database retrieval system
