Mitsuaria sp. 7: ABE85_00925
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Entry
ABE85_00925 CDS
T04402
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
miu
Mitsuaria sp. 7
Pathway
miu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
miu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABE85_00925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miu03400
]
ABE85_00925
Enzymes [BR:
miu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABE85_00925
DNA repair and recombination proteins [BR:
miu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABE85_00925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ElaD-SseL-like_C
DUF924
ERCC3_RAD25_C
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
ANH66479
UniProt:
A0A1A9HHE6
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All DBs
Position
complement(196946..200413)
Genome browser
AA seq
1155 aa
AA seq
DB search
MQLSTISPGKRFTLPRPTGSADALLLARFARQQQAAGRLTLIVTAEPGDTQRLEDELKFF
APELRVAVFPDWETLPYDSFSPHQDLISERLATLWRLLQANGKPVAERDLDVVLLPATTA
LTRLAPPSFLAATTFNFRQKQRLDEAGLKRQLTLGGYQHVSQVVSPGEYAVRGGLIDLYP
MGSLVPYRVDLFGDEVDSIRVFDPDSQRSLYPVPEVRLLPGREFPMDEASRKAFRARWRE
KMDGDPTKSRIYKDIDTGLATGGIEYYLPLFFDEVASVFDYVPAEAGLVLHGEVDEALQR
YWTDTRERHRFLQHDPDRPILAPEEIFLRPEEFFTATHRHAVLAVRGQEPVDYARPLPDV
SVERGAQEPLARLAAHLKSTSFRVLLLAESEGRRESLLELLRDNKIDPPSVKDLAEFEAN
KDERFAITAAPLAAGFFWHEPDEGRQIQLLTETELFATTPTTRRRRKQEQVSDVNALIKD
LSELKVGDPVVHTNHGIGRYLGLINIDLGDGPSEFLHLEYADKATLYVPVAQLHLISRYT
GVSAEEAPLHRLGSGQWDKARRKAAEQVRDTAAELLNLYARRAAREGHAFRYSPHDYEAF
AASFGFEETPDQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVA
LLAPTTLLAEQHYQNIVDRFGRWPVKVAEMSRFRSAKEIKAAMEGLADGSIDIVIGTHKL
LSPDVKFMRLGLLVIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDL
SVIATAPQRRLAIKTFVRSETSGTIREAILRELKRGGQVYFLHNEVETIENRRMKLEELL
PEARIVVAHGQMPERELERVMREFVGGKHNVLLCSTIIETGIDVPSANTIVISRADKFGL
AQLHQLRGRVGRSHHQAYAYLMVPDVEGLTKQAAQRLDAIQAMEELGSGFYLAMHDLEIR
GAGEVLGEHQSGNMMEIGFQLYNEMLSEAVRSLKAGREPDLLSPLSATTEINLHAPALLP
DAYCGDVHQRLSLYKRLATADRAEQIDAMLEEITDRFGKLPAQGQTLFDTHRLRVLAKPY
GVMKIDAAPSVININFRPNPPIDPMRVIELVQKNRNIKLVGNEKLRIDKALTDPKDRAQA
VREVLRLLGAPVAQA
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgtccacgatctcccccggcaaacgcttcaccctgccccgtcccaccggctcc
gccgacgcgctgctgctcgcccgcttcgcgcggcagcagcaggccgccggccggctgacg
ctcatcgtcaccgccgagcccggcgacacgcagcgcctggaggacgaactcaagttcttc
gcgcccgaactgcgcgtcgccgtcttccccgactgggagaccttgccgtatgacagcttc
agcccgcaccaggacctgatctccgaacggctggccacgctgtggcggttgctgcaggcg
aacgggaagccggtggcggagcgcgacctcgacgtcgtgctgctgcccgcgaccaccgcg
ctgacccggctggcgccgccgtccttcctcgccgcgaccaccttcaacttccgccagaag
cagcgcctggacgaggccggcctcaagcgccagctcacgctgggcggctaccagcacgtc
agccaggtcgtctcgcccggcgagtacgcggtgcgcggcgggctgatcgacctctacccg
atgggctcgctggtgccctaccgcgtggacctcttcggcgacgaggtggattccatccgc
gtgttcgatccggactcgcagcgctcgctctacccggtgccggaagtgcgcctgctgccc
gggcgcgagttccccatggacgaggcgtcgcgcaaggccttccgcgcccgctggcgcgag
aagatggacggcgatccgaccaagtcgcgcatctacaaggacatcgacacgggcctggcc
acgggcggcatcgagtactacctgccgctgttcttcgacgaggtcgccagcgtgttcgac
tacgtgcccgccgaggccggactcgtgctgcacggcgaggtcgacgaggcgctgcagcgc
tactggaccgacacccgcgagcgccaccgcttcctgcagcacgacccggaccggccgatc
ctggcgcccgaggagatcttcctgcggcccgaggagttcttcaccgcgacgcaccgccac
gcggtgctggccgtgcgcggccaggagcccgtcgactacgcgcgcccgctgcccgacgtg
agcgtcgagcgcggcgcgcaggaaccgctggcgcgtctggccgcgcacctgaagtccacg
agcttccgcgtgctgctgctggccgagagcgaaggccgccgcgagagcctgctcgaactg
ctgcgcgacaacaagatcgatccgccgtcggtgaaggacctggccgagttcgaggccaac
aaggacgagcgcttcgccatcaccgccgcgccgctggccgcgggcttcttctggcatgaa
ccggacgaaggccgccagatccagctcctcaccgagaccgagctcttcgcgaccacgccc
accacgcgccgccggcgcaagcaggagcaggtcagcgacgtcaacgcgctgatcaaggac
ctgtccgagctgaaggtcggcgatccggtggtgcacaccaaccacggcatcggccgctac
ctcggcctgatcaacatcgacctgggcgacggccccagcgagttcctccacctcgagtac
gccgacaaggccacgctctacgtgccggtcgcgcagctgcacctgatcagccgctacacc
ggcgtcagcgccgaggaagcgccgctgcaccggctgggatcgggccagtgggacaaggcc
aggcgcaaggccgccgagcaggtgcgcgacaccgccgccgagctgctcaacctctacgcc
cgccgcgccgcgcgcgaggggcatgccttccgctactcgccgcacgactacgaggccttc
gccgcgagcttcggcttcgaggagacgcccgaccagcgcgccgcgatccacgccgtcatc
caggacatgatcagcccccggccgatggaccggctggtgtgcggcgacgtcggtttcggc
aagaccgaggtcgcgctgcgcgccgccttcgtggcggtgatgggcggcaagcaggtcgcg
ctgctggcgccgacgacgctgctggccgagcagcattaccagaacatcgtcgaccgcttc
ggccgctggccggtgaaggtcgccgagatgagccgcttccgctccgccaaggagatcaag
gcggcgatggagggcctggccgacggctcgatcgacatcgtcatcggcacgcacaagctg
ctgtcgccggacgtgaagttcatgcgcctggggctgctcgtcatcgacgaggagcaccgc
ttcggcgtgcgccacaaggaggcgatgaaagcgatgcgcgccgaggtcgacgtgctgacg
ctgaccgccacgccgatcccgcgcacgctgggcatggcgctggagggcctgcgcgacctg
agcgtcatcgccaccgcgccgcagcggcgcctggcgatcaagaccttcgtgcgcagcgag
accagcggcaccatccgcgaggccatcctgcgcgagctcaagcgcggggggcaggtctac
ttcctgcacaacgaggtcgagaccatcgagaaccgccgcatgaagctcgaggaactgctg
ccagaggcgcgcatcgtcgtcgcccacggccagatgcccgagcgcgagctggagcgcgtg
atgcgcgagttcgtcggcggcaagcacaacgtgctgctgtgctcgaccatcatcgagacc
ggcatcgacgtgcccagcgccaacaccatcgtcatcagccgcgccgacaagttcggcctg
gcgcagctgcaccagctgcgcggccgcgtcggccgctcgcatcaccaggcctatgcctac
ctgatggtgccggacgtcgagggcctgaccaagcaggcggcgcagcggctggacgcgatc
caggcgatggaggaactgggctcgggcttctacctcgcgatgcacgacctggagatccgc
ggcgccggcgaggtgctgggcgagcaccagagcggcaacatgatggagatcggtttccag
ctctacaacgagatgctgtccgaggccgtgcgctcgctcaaggccggccgcgagccggac
ctgctcagccccttgtcggccacgaccgagatcaacctgcacgcccccgcgctgctgccc
gacgcctactgcggcgacgtgcaccagcggctgtcgctgtacaagcggctcgcgacggcg
gaccgcgccgagcagatcgacgcgatgctcgaggagatcaccgaccgcttcggcaagctg
cccgcgcagggccagacgctgttcgacacgcaccgcctgcgcgtgctggccaagccctac
ggcgtgatgaagatcgacgcggcgcccagcgtcatcaacatcaacttccggcccaacccg
cccatcgatccgatgcgcgtcatcgagctcgtgcagaagaaccgcaacatcaagctggtg
ggcaacgagaagctgcgcatcgacaaggcgctcaccgatccgaaggaccgcgcgcaggcc
gtgcgcgaggtgctgcggctgctcggcgcgccggtggcgcaggcctga
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