KEGG   Mitsuaria sp. 7: ABE85_05760
Entry
ABE85_05760       CDS       T04402                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
miu  Mitsuaria sp. 7
Brite
KEGG Orthology (KO) [BR:miu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ABE85_05760 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:miu03400]
    ABE85_05760 (ligD)
Enzymes [BR:miu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ABE85_05760 (ligD)
DNA repair and recombination proteins [BR:miu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ABE85_05760 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ANH67199
UniProt: A0A1A9HJF6
LinkDB
Position
1300702..1303371
AA seq 889 aa
MPTAPRQDPLTRYRQKRDFRITPEPDDADHGPGQAAKRAKRPARAAGTGAKTTAKASAQT
LSFVIQKHWASHLHYDFRLELDGVLLSWAVPKGPSYDTKERRMAIHVEDHPLSYGGFEGT
IPPKQYGAGEVIVWDNGTWTPEGDPHDGLRDGKLVFRLHGQKLAGLWQLIRTSRDASKRE
QWLLIKKHDGLERPHADYDVTLELPDSVIQRPLGKAKVDAEVMTATETAGSTEPDLSRAK
KARLPAELTPQLATLVSATPPGDWIAEAKFDGYRLMARVDKGKVRLMTRGGNDWTARLPS
LAEAITGLGIDNGWLDGEIVVLRDDGAPDFSLLQNAIGHPTRTRHEDIVYFLFDLPFLNG
HDLREVPLIHRRAVLRALMEGHEDGDAGGHADGHADGRLRFSEDFAVPPEEMLAAACQMR
LEGLILKRPDSGYVSARSEAWVKLKCQQRQEFVVVGFTDRSDGAKALGSLLLGYYEDGAL
RYAGRVGTGWSLKLAGEMHKQLAALEVKTPHFDEQTIARSHWARMSGRTGGDARWVKPKL
VVEVAFAEWTPDGHVRHASFQGQREDKAPKDVGRESAKPAEELKVSKSPSSKSPKSSRSP
KSPKSSEPTTSGALGQLRITHPERVIDPSTGHTKIELIRYYESVVEWMQPHLGRRPVAIV
RAPDGVEGQLFFQKHVDGDELIVLRDPVALMQLTQMNAIEFHTWNAQDDKPARADRFIID
LDPGEGVAFPAVVDAARITRALLKELGLQAWLKTSGGKGLHVVVPLARRHDHATAKAFSQ
ALVQHLAETFPKKFSAKSGPKNRVGKIFPDYLRNGEGQTTACAFTVRARPGLGVSMPIAW
DELDDVKRGDQWTLANARDRLSFQKLDPWKDYWTTNQTLTAGLRLLGLK
NT seq 2670 nt   +upstreamnt  +downstreamnt
atgccgaccgcgccgcgccaggatccgctgacccgttaccggcagaagcgggacttccgc
atcacgcccgaaccggacgacgccgatcacggccccggacaggccgccaagcgggcgaag
cggccggcgcgcgccgccgggaccggcgccaagaccactgcaaaggcgtcggcgcagacg
ctctccttcgtcatccagaagcactgggcgagccatctgcattacgacttccgtctggag
ctcgacggcgtgctgctgagctgggccgttcccaaagggccgtcgtacgacacgaaggaa
cgccgcatggcgatccacgtcgaggaccacccgctgtcctacggcggcttcgaaggcacc
atccctccgaagcagtacggcgccggtgaggtcatcgtctgggacaacggcacctggacg
ccggaaggcgatccgcacgacgggctgcgcgacggcaagctggtgttccggctgcacggg
cagaagctcgccggcctgtggcaactcatccgcacctcgcgtgatgcgtccaagcgcgag
cagtggctgctgatcaagaagcacgacggcctggagcgcccgcatgcggactacgacgtc
accctagagctacccgacagcgtgatccagcgtccattgggaaaggccaaggtcgatgcc
gaggtaatgacggcgacggagacggcgggaagcactgagcccgacctgagccgcgcgaag
aaggcgcggctgcccgccgagctcacgccgcagctcgcgacgctggtcagtgccactccg
cccggcgactggatcgccgaggccaagttcgacggctaccggctgatggcccgggtcgac
aagggcaaggtccggctgatgacgcgagggggcaacgactggacggcgcggctgccctcg
ctggcggaggcgatcacgggtctcggcatcgacaacggctggctggacggcgagatcgtc
gtgctgcgcgacgacggcgcgcccgatttcagcctgctgcagaacgcgatcggccatccg
acgcggactcggcatgaggacatcgtgtacttcctcttcgatctgccgttcctcaacggc
catgacctgcgcgaagtgccgctgatccaccgccgcgccgtgctgcgcgcgctgatggaa
ggccatgaagacggcgatgcgggcggtcatgcggacggtcatgcggacggacggctgcgc
ttcagcgaggactttgcggtaccgcccgaggagatgctcgccgccgcgtgccagatgcgg
ctcgagggcctgatcctgaagcggcccgacagcggctacgtgtccgcccgcagcgaggcg
tgggtgaagctgaagtgccagcagcggcaggagttcgtcgtcgtcggattcacggaccgc
tccgacggcgcgaaggcgctgggcagcctgctgctcgggtactacgaagacggcgcgctc
cgctacgccgggcgtgtcggcacaggctggtcgctgaagctggccggcgagatgcacaag
cagctcgcggcgctggaggtcaagacgccgcacttcgatgaacagaccatcgcccgcagc
cattgggcccgcatgagcgggcgcaccggcggcgatgcgcgctgggtgaaacccaagctc
gtcgtggaagtcgccttcgcggaatggacgcccgatggccacgtgcgccacgcctcgttc
cagggccagcgcgaggacaaggcgccgaaggacgtcgggcgggagtctgccaagccggca
gaggagctcaaagtgtcgaagtccccatcgtccaagtcccccaagtcgtccaggtcccca
aagtcccccaagtcttccgagccgacgacctcaggcgctttggggcaactccgcatcacg
catccggagcgcgtgatcgatccgtccaccggccacacgaagatcgagctgatccgctac
tacgagagcgtggtcgagtggatgcaaccccacctcggccggcggcccgtggcgatcgtg
cgcgcgcccgacggcgtcgagggacagctgttcttccagaagcacgtggatggcgacgag
ctcatcgtcctgcgcgacccggtggcgctgatgcaactgacgcagatgaacgccatcgag
ttccacacctggaacgcgcaggacgacaagccggcccgcgcggaccgcttcatcatcgac
ctggatccgggcgagggcgtggccttccccgcggtcgtcgatgcggcgcgcatcacgcgc
gcgctgctcaaggaactcggcctgcaagcctggctcaagaccagcggcggcaaggggctg
cacgtggtcgtcccgctggcgcgtcgccacgaccacgcgacggcgaaggccttcagccag
gcgctggtacagcatctggccgagaccttcccgaagaagttctcggcgaagagcggaccg
aagaaccgcgtcgggaagatcttcccggactacctccgcaacggggaagggcagaccacc
gcctgcgccttcacggtccgtgcgcggcccggcctgggcgtctcgatgcccatcgcctgg
gacgagctcgatgacgtgaagcgaggcgaccagtggaccctcgccaacgcgcgggaccgg
ctcagcttccagaagctcgatccgtggaaggactactggacgacgaaccagacgctgacg
gcggggctcaggctactcggcctgaagtga

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