Mitsuaria sp. 7: ABE85_10100
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Entry
ABE85_10100 CDS
T04402
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
miu
Mitsuaria sp. 7
Pathway
miu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABE85_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miu03019
]
ABE85_10100
03016 Transfer RNA biogenesis [BR:
miu03016
]
ABE85_10100
Enzymes [BR:
miu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ABE85_10100
Messenger RNA biogenesis [BR:
miu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABE85_10100
Transfer RNA biogenesis [BR:
miu03016
]
Prokaryotic type
tRNA degradation factors
ABE85_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
S1_RRP5
aRib
KH_KhpA-B
S1_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
ANH67843
LinkDB
All DBs
Position
complement(2276193..2278331)
Genome browser
AA seq
712 aa
AA seq
DB search
MSMFNKVVKTFQWGQHQVVMETGEIARQSSGAVLVNIEDTVVLATVVAKSSPKAGQDFFP
LTVDYIEKTYAAGKIPGSFFKREGRPSELETLTSRLIDRPIRPLFPEGFFNEVQVVIHTV
SLNPEVQADIAALIATSAALAISGIPFNGPIGAARVGYVNGEYVLNPGKTQLIDSKLDLV
VAGTEAAVLMVESEADQLSEDIMLGAVTFGHDQGKTAIAAINELVRDAGKPSWNWVAPAK
DEAFIAKVTALAEEELRAAYQIRSKQARTEACRSAYSKVKAALTAEGTDFDGVEVDGLLF
EIEARIVRGQILAGEPRIDGRDTRTVRAIEIRNGVLPRAHGSSLFTRGETQALVAATLGT
DRDAQTIDALAGEYSERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVAVLPTK
EDFPYSIRVVSEITESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKDANRFAVL
TDILGDEDHLGDMDFKVAGTTSGITALQMDIKIQGITKEIMQVALAQAKEARLHILEAMV
GAQGEANAEISQFAPRLYTMKINPEKIRDVIGKGGATIRALTEETGTQIDIGEDGTITIA
STDGAKAEIAKKRIAEITAEAEIGKVYEGPVTKILDFGALVNILPGKDGLLHISQIAHQR
VEKVTDFLSEGQIVKVKVLETDEKGRIKLSMKALLDRDAPAPHHGHGEGSAE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaacaaggtcgtgaagaccttccaatggggccaacatcaagtcgtgatg
gagaccggcgaaatcgcccgtcaatcctccggcgccgtgctggtgaacatcgaggacacc
gtggtgctggcgaccgtcgtcgccaagtcctcgccgaaggccggccaggacttcttcccg
ctgaccgtcgactacatcgagaagacctacgccgccggcaagatccccggcagcttcttc
aagcgtgaaggccgtccgagcgagctcgagaccctgacctcgcgcctgatcgaccgcccg
atccgcccgctgttcccggaaggcttcttcaacgaagtccaggtcgtgatccacacggtg
tcgctgaaccctgaagtccaggccgacatcgccgccctgatcgccaccagcgccgcgctg
gccatctccggcatcccgttcaacggcccgatcggcgctgcgcgcgtgggttacgtcaac
ggcgaatacgtgctgaacccgggcaagacccagctgatcgactccaagctggacctggtc
gtcgccggcaccgaagccgccgtgctgatggtcgagtccgaagccgaccagctcagcgaa
gacatcatgctgggcgccgtgaccttcggtcacgaccagggcaagaccgccatcgccgcg
atcaacgaactggtccgcgacgccggcaagccgtcctggaactgggtcgccccggccaag
gatgaggccttcatcgccaaggtcaccgccctggccgaggaagagctgcgcgccgcctac
cagatccgttcgaagcaggcccgtaccgaagcctgccgctcggcctactcgaaggtcaag
gctgccctgacggccgaaggcaccgacttcgacggcgtcgaagtcgacggcctgctgttc
gagatcgaagcccgcatcgtccgcggccagatcctggccggcgagccgcgcatcgacggc
cgcgacacccgcaccgtccgcgccatcgagatccgcaacggcgtgctgccgcgcgcccac
ggctcgtcgctgttcacccgcggtgaaacgcaggcgctggtcgccgcgacgctgggcacc
gaccgcgacgcgcagaccatcgacgcgctggccggcgagtactccgagcgcttcatgctg
cactacaacatgcctccgttcgccaccggcgaaaccggtcgcgtgggcagccccaagcgc
cgcgaaatcggccatggccgtctggccaagcgcgcgctcgtcgccgtgctgccgaccaag
gaagatttcccgtactcgatccgcgtggtctcggaaatcaccgagtccaacggctcctcg
tcgatggcttcggtctgcggcggctgcctgtcgctgctggacgccggcgtgccgctgaag
gcgcacgtcgccggcatcgccatgggcctgatcaaggacgccaaccgcttcgccgtgctg
accgacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtggccggcacg
acctcgggcatcaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatc
atgcaggtcgccctggcgcaagccaaggaagcccgcctgcacatcctcgaagcgatggtc
ggcgcccaaggcgaagccaacgccgagatctcgcagttcgcgccgcgtctgtacacgatg
aagatcaatccggagaagatccgtgacgtgatcggcaagggcggcgccaccatccgcgcg
ctgaccgaagagaccggcacgcagatcgacatcggcgaagacggcacgatcacgatcgcg
tcgaccgacggcgccaaggccgagatcgccaagaagcgcatcgccgagatcaccgcggaa
gccgagatcggcaaggtctatgaaggcccggtcaccaagatcctggacttcggcgcgctg
gtcaacatcctgccgggcaaggacggcctgctgcacatcagccagatcgcgcaccagcgc
gtcgagaaggtcaccgacttcctcagcgaaggtcagatcgtcaaggtcaaggtgctcgag
accgacgagaagggccgcatcaagctgtcgatgaaggcgctgctggaccgcgacgctccg
gcgccgcaccacggccacggcgaaggctcggccgagtaa
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