Microvirga sp. 17 mud 1-3: C4E04_01550
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Entry
C4E04_01550 CDS
T05470
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4E04_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miv03400
]
C4E04_01550
Enzymes [BR:
miv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C4E04_01550
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C4E04_01550
DNA repair and recombination proteins [BR:
miv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4E04_01550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Myb_DNA-binding_2
Motif
Other DBs
NCBI-ProteinID:
AWM85558
UniProt:
A0A2Z3I1A4
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All DBs
Position
complement(333409..334290)
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLEPAMVGARFTKVTQRRPDLRFPFPERFAERLEGQEVTALGRRAKYL
LADLSSGEVLVMHLGMSGRFLVSEGGQEVRPGAFHHEHGAAGAHDHVVFSLSNGATVTYN
DARRFGFMDLVTRAEIETCRHFKTMGIEPLGNALSGETIAQLFAGRRTPLKAALLDQRLI
AGLGNIYVCEALFRTGLHPEAPAGSLVSPKGRPTAKAHRLAEVIRDVLNEAVAAGGSTLR
DHARVDGTLGYFQHAFQVYDREGEPCVTPGCKGTVSRLVQGGRSTFYCPSCQR
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacttcccgaagtcgagaccgtccgcaggggcctggagcctgccatggtgggg
gcccggttcacgaaagtgacccagcgccgcccggatctgcgcttcccctttccggagcgg
ttcgccgagcgcctggagggccaggaggtcaccgccctggggcgccgcgccaaatatctc
ctggcggacctgtcgtccggagaggttctggtcatgcatctgggcatgtcggggcgcttt
ctcgtctcggaagggggccaggaggtcaggcccggggcattccaccatgaacatggggcc
gcgggcgcgcatgaccacgtggtcttctccctgtcgaacggcgctaccgtcacatacaat
gacgcccgccgattcggtttcatggacctcgttacccgggccgagatcgagacctgccgg
catttcaagaccatgggcatcgagcccctcggcaatgccctttcgggcgagaccatcgcg
cagctcttcgccggccgccgcacgccgctcaaggcggctctcctcgatcagcgcctgatc
gcgggtctcggcaacatctatgtctgcgaggccctgttccggaccggcctccacccggag
gcgccggccggctcccttgtgtctcccaaggggcggcccaccgcgaaggcgcacaggctc
gccgaggtgatccgcgacgtcctgaacgaggccgtcgcggccggcggctcgaccctccga
gaccatgcccgcgtggacgggaccctgggctatttccagcatgccttccaggtttacgat
cgggagggtgaaccctgcgtcacgccgggctgcaagggcacggtctcgcgactggtccag
gggggccgctccaccttctactgcccgtcctgccagcggtag
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