Microvirga sp. 17 mud 1-3: C4E04_05600
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Entry
C4E04_05600 CDS
T05470
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03420
Nucleotide excision repair
miv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4E04_05600
03430 Mismatch repair
C4E04_05600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
miv03400
]
C4E04_05600
Enzymes [BR:
miv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4E04_05600
DNA repair and recombination proteins [BR:
miv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4E04_05600
MMR (mismatch excision repair)
Other MMR factors
C4E04_05600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
AWM89002
UniProt:
A0A2Z3IJ53
LinkDB
All DBs
Position
complement(1190408..1192786)
Genome browser
AA seq
792 aa
AA seq
DB search
MNQPDTRPEPQGDAAFEPASGSLSARARAAVTPQSPYLSGLNPEQRAAVEATEGPVLVLA
GAGTGKTRVLTTRIAHLIATGKARPFDILAVTFTNKAAREMRERVASLIGPVAEGMQWLG
TFHSIGTKILRRHAELVDLRSDFTILGTDDQLRLMKQVIEAEGIDEKRWPARQLASIIDG
WKNRGLGPDQVPAGEAGAFASGRGGKLYRAYQERLKTLNAVDFGDLLLECLRLWREHPDI
LQQYQNRFRYMLVDEYQDTNVAQYLWLRLLAQARKNLCCVGDDDQSIYGWRGAEVDNILR
FDHDFPGATVIRLERNYRSTAHILSAASGLIAKNQGRLGKTLRTEDEPGEKVSITGAWDS
EDEARLIGEEIEALHAKRHPLSEIAILVRISAQMRELEDRLVTLGVPYRVIGGPRFYERA
EIRDALAYLRVVNQPADDLAFERIVNVPKRGLGDATIQVLHNHARAARVPLLEAARFIVE
TDELKPKPRATLRDLLISFGRWAKLSETMTQSEVAQTVLEESGYTEMWQKDKSADAAGRL
ENLKELVRSMEEFPDLQSFLEHVSLVMEANESDTTERVSLMTLHAAKGLEFDTVFLPGWE
EGLFPNQRALDESGRAGLEEERRLAHVGLTRARRRAKIYFASNRRIHGLWNSTVPSRFID
DLPEADVEIMEAPANFSYGGGFGGGSRFDRMTPFSGSSYQTPGWQRAQAHRSTADDGGYS
ARRSGDRRGPMMIEGELVAKSTGGSSFSVGGRVLHTKFGPGTVEAVDGNKLTVEFDKAGR
KMVLDSFVESLG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcctgacaccagacccgaaccgcagggcgatgccgcgttcgagccggcttcc
ggttccctgagcgcccgcgcccgtgcggcggtcaccccgcaatcgccctatctctcgggc
ctcaatccggagcagcgcgccgccgtggaggcgaccgagggtcccgttctcgtgctggcg
ggcgccggcacgggcaagacccgggtgctcacgacccgcatcgcccacctcatcgccacc
gggaaggcccggcctttcgacatcctcgccgtgaccttcaccaacaaggcggcccgcgag
atgcgcgagcgcgtggcctccctcatcggcccggtggctgaggggatgcagtggctcggc
accttccactccatcggcaccaagatcctgcgccgccatgcggaactcgtggatctgcgc
tccgacttcacgattctcggcacggatgaccagctgcgcctgatgaagcaggtgatcgag
gcggaaggcatcgacgagaagcgctggcctgcccggcagctcgcctccatcatcgacggc
tggaagaaccggggcctcgggcccgaccaggtgccggccggcgaggcgggcgcctttgcc
agcggccggggcggaaagctctaccgggcctatcaggaacgcctgaagaccctcaacgct
gtcgatttcggcgacctgctgctggaatgcctgcgcctttggcgcgagcatccggatatc
ctccagcaataccagaaccgcttccgctacatgctggtggacgagtaccaggacaccaac
gtcgcccagtatctctggcttcgcctcctggcgcaggcccgcaagaacctgtgctgcgtg
ggcgacgacgaccagtcgatctatggctggcgcggtgccgaggtggacaacatcctgcgc
ttcgaccacgattttcccggcgccaccgtgatccggctggagcggaactaccgctcgacc
gcgcacatcctctctgccgcctcgggcctgatcgccaagaaccagggccgcctcggcaag
acgctgcggaccgaggacgagccgggcgagaaggtctcgatcacgggcgcctgggactcg
gaggacgaggcgcgcctcatcggcgaggagatcgaggcgctgcatgccaagcgccatccc
ctgtcggagatcgccattctggtacgcatatcggcccagatgcgcgagctggaagaccgg
ctcgtgaccctcggcgtgccctaccgggtcatcggcggtccgcgcttctacgagcgggcg
gaaatccgggacgccctggcgtatctgcgggtcgtcaaccagccggcggacgatctcgcg
ttcgagcgcatcgtcaacgtgcccaagcgcggcttgggagatgcgacgatccaagtgctg
cacaaccatgcccgcgcggcgcgggtgccgctgctcgaagcggcgcgcttcatcgtcgag
accgacgagctgaagccgaagccgcgggcgaccctgcgcgatctgctgatttccttcggg
cgctgggcgaagctctccgagaccatgacccagtccgaggtagcccagaccgtgctagag
gaatccggctacacggagatgtggcagaaggacaagtcagcggatgcggcggggcggctc
gagaacctcaaggagctcgtgcgctccatggaggaattcccggacctgcagagcttcctg
gaacacgtctcgctggtgatggaggcgaacgagtccgacaccaccgagcgcgtgagcctg
atgaccctccatgccgcgaagggcctggaattcgacaccgtgttcctgcccggctgggag
gaaggcctgttccccaaccagcgggcgctcgacgagagcggccgcgctggcctggaggaa
gagcgccgcctcgcccatgtgggactgacccgggcccggcgccgggccaagatctatttc
gcgtccaaccggcggatccacggcctctggaactcgaccgtcccgagccgcttcatcgac
gacctgccggaggccgacgtggagatcatggaggcgcccgccaacttctcctatggcggc
ggcttcgggggcggctcccgcttcgaccggatgacgcctttttcgggctccagctaccag
acccccggctggcagcgggcacaggcccaccgttccacggctgacgacggcggctattcg
gcccgccgctcaggcgaccggcgcgggccgatgatgatcgagggtgagctcgtggcgaaa
tccaccggcggctccagcttctcggtgggcggaagggtgctccacaccaagttcgggccg
ggcaccgtcgaggccgtggatggcaacaagctcacggtggagttcgacaaggccggccgg
aagatggtgctcgacagtttcgtagagtcgctggggtaa
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