Microvirga sp. 17 mud 1-3: C4E04_07960
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Entry
C4E04_07960 CDS
T05470
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4E04_07960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
miv03021
]
C4E04_07960 (rpoC)
03400 DNA repair and recombination proteins [BR:
miv03400
]
C4E04_07960 (rpoC)
Enzymes [BR:
miv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4E04_07960 (rpoC)
Transcription machinery [BR:
miv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4E04_07960 (rpoC)
DNA repair and recombination proteins [BR:
miv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4E04_07960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AWM86664
UniProt:
A0A2Z3I3Y2
LinkDB
All DBs
Position
1699953..1704128
Genome browser
AA seq
1391 aa
AA seq
DB search
MNQEVMNLFNQTAQPQSFDQIKISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFESYIVVDAGLTPLKDRQLLTEEEYLRAQDEYGEDSFTA
MIGAEAIRRILQELDLEKIAIDIREEIAVTTSELKPKKLMKRLKIIEAFLQSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYAKLDARGLSATVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIVSDGEPGQGKAFADMGEIEHALH
EKVITLHSKIRYRWEGIGENGEPVSKIYETTAGRVMLSRVLPKHPNLPFDVVNKLMTKKE
ISNMIDAVYRHCGQKESVIFCDRIMALGFYNAFKAGISFGKDDMVIPENKWQIVEETRAL
AKDYEQQYQDGLITQGEKYNKVVDAWAKCSDRLAGEMMARISAVQKDDNGRDKPVNSIYM
MSHSGARGSPAQMKQLAAMRGLMAKPSGEIIETPIISNFKEGLDVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDAVIRETDCGTERGIRMRAIIDAGQVVASLASRILGRST
AEDLVAADGSIIVPKGTMIEEAHLEAIGAAGIQEVKIRSVLVCESKNGVCATCYGRDLAR
GTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQIADSSFIESSFEGTIGFRNKNIA
RNSDGDLVVMGRNVSVVIYGADGSERAAHRLQYGSRLKVDEGDTIKRGQRIAEWDPYTRP
ILTEIEGVVGYEDLVDGGSMIETMDESTGIAKRVVIDWRGSPRTADLRPAVIIEGKGGKV
AKLPRGGDARYLLPVDAILAMDPGSKVKAGDVLARVSTESAKTRDITGGLPRVAELFEAR
RPKDAAIIAEKSGTIQFGRDYKNKRRLTLTPHDGSEPVEYLIPKGKHIHLQDGDVVELGD
FIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITD
SGDSDFLTGEQVDRLELEEANERLEAEKKKPAAGVPVLLGITKASLQTRSFISAASFQET
TRVLTEAAVNGKVDTLEGLKENVIVGSLIPAGTGALNAQVKAVAQHRDELILQQKRAESQ
AAVNELPPAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaggtcatgaatcttttcaaccaaacggcgcagccgcagagcttcgatcag
atcaagatctcgatcgcgagccctgagaagattctgtcctggtcatacggcgagatcaag
aagccggagaccatcaactaccgcacgttcaagccggagcgcgacggcttgttctgcgcg
cgcatcttcggcccgatcaaggactacgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcgtgatctgcgagaagtgcggcgtcgaggtgactctcgcccgcgttcggcgc
gaccgcatgggtcacatcgagctcgccgctcccgtggcgcatatctggttcctcaagtcc
ctgccgagccgcatcggtctgctgctcgacatgaccctgaaggatctggagcggattctc
tatttcgaatcctacatcgtcgtcgatgccggcctgacccccctgaaggaccgccagctt
ctgaccgaggaggagtacctccgcgctcaggacgagtatggcgaggattccttcacggcc
atgatcggcgcggaagccatccgccgcatcctccaggaactcgacctggagaagatcgcg
atcgacatccgcgaggagattgcggtcaccacgtcggagctgaagccgaagaagctgatg
aagcgcctcaagatcatcgaggcgttcctccagtccggcaataagcccgaatggatgatc
ctgacggttgttccggtgatcccgccggatctgcgtccgctcgttccgctcgatggcggc
cgcttcgcgacgtcggacctgaacgatctctatcgccgcgtcatcaaccgtaacaaccgc
ctgaagcgcctcatggagctgcgtgcgccggacatcatcgtccgcaacgagaagcgcatg
ctccaggaggccgtcgacgccctgttcgacaacggccgtcgtggccgcgtcatcacgggt
gccaacaagcgtccgctcaagtccctcgccgacatgctcaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtggactattcgggccgctcggtcatcgtggtcggt
ccggagctgaagctccatcagtgcggcctgcccaagaagatggcgctcgagctcttcaag
ccgttcatctacgccaagctcgacgctcgcggcctctcggccaccgtcaaacaggcgaag
aagcttgtcgagaaggaaaagcccgaggtctgggacatcctggacgaggtcatccgcgag
cacccggttctcctgaaccgcgctccgaccctgcaccgtctcggcatccaggccttcgaa
cccaccctgatcgagggcaaggcgatccagctgcacccgctcgtctgcgccgcgttcaac
gcggacttcgacggcgaccagatggctgtccacgtgccgctctcgctcgaggcgcagctc
gaagcccgcgtgctgatgatgtccacgaacaacatcctgcacccggccaacggccagccg
atcatcgtgccgtcgcaggacatcgttctgggcctgtactacctctcgatcgtctccgac
ggcgagcccggccagggcaaggcctttgcggatatgggcgagatcgagcacgccctgcac
gagaaggtcatcacgctccactcgaagatccgctaccgctgggaggggattggcgagaat
ggcgagccggtcagcaagatctatgaaacgaccgccggtcgcgtcatgctctcgcgcgtt
ctgccgaagcatcccaacctgcccttcgacgtcgtgaacaagctcatgacgaagaaggaa
atctccaacatgatcgatgccgtgtaccggcactgcggtcagaaggagtcggtgatcttc
tgcgatcgcatcatggccctcgggttctacaacgcgttcaaggccggcatttcgttcggc
aaggacgacatggtgatcccggagaacaagtggcagatcgtcgaggagacccgtgccctc
gcaaaggactacgagcagcagtaccaggacggcctcatcacccagggtgagaagtacaac
aaggtcgtcgatgcctgggcgaaatgctcggatcgccttgctggcgagatgatggcgcgt
atctcggccgtgcagaaggacgacaacggccgcgataagccggtgaactccatctacatg
atgtcgcattccggtgcccgtggttcgccggcccagatgaagcagctcgcggctatgcgc
ggcctcatggccaagccgtcgggcgagatcatcgagacgccgattatctcgaacttcaag
gaaggcctggacgtgctcgagtacttcaactcgacccacggtgcccgtaagggcctggcc
gacactgcgctcaagactgcgaactcgggttacctgacccgccgtctcgtggatgtggcg
caggacgcggtcatccgcgagaccgattgcggcaccgagcgcggcatccgcatgcgggcc
atcatcgatgccggccaggtggtcgcatcgctggcctcccgcatcctgggccgctcgacg
gccgaggatctggtggctgccgacggctccatcatcgttccgaaggggacgatgatcgag
gaggcgcatctggaggccatcggcgctgccggcatccaggaggtaaagatccgttccgtg
ctcgtctgcgagtcgaagaacggcgtctgcgccacctgctacggtcgcgacctggcccgc
ggtacgccggtcaaccacggcgaggctgtcggcgtcatcgcggcacagtccatcggcgag
ccgggcactcagctcaccatgcgcaccttccacatcggcggtgcggcccagattgccgac
tcgtccttcatcgagtcgagcttcgagggcacgatcggcttccgcaacaagaacattgcg
cggaactcggacggcgacctggtggtcatgggccgcaacgtgtccgtcgtcatctatggg
gcggacggcagcgagcgggcagcccatcgcctgcaatacggctcccgcctgaaggtggac
gagggcgacacgatcaagcgcggccagcgcatcgccgaatgggatccctatacccgcccg
atcctcaccgagatcgagggcgtggtgggctatgaggacctcgtcgacggcggctcgatg
atcgagaccatggacgagtccaccggcatcgcgaagcgcgtcgtcatcgactggcgcggc
tcgccgcgcacggcggacctgcgtccggcggtcatcatcgagggcaagggcggcaaggtt
gccaagctgccgcgtggcggcgacgcccgctacctgctcccggtcgacgcgatcctcgcg
atggatccgggctcgaaggtcaaggccggcgacgtgctcgcccgtgtctcgaccgagagc
gccaagacccgcgacatcaccggcggtctgccgcgcgtggcggagctgttcgaggcccgt
cgtccgaaggatgcggccatcattgcggagaagtccggtacgattcagttcggccgcgac
tacaagaacaagcgtcgcctgacgctgaccccgcacgatggctccgagccggtggaatac
ttgatccccaagggcaagcacatccacctgcaggatggggacgtggtggaactcggcgac
ttcatcgtcgacggaaacccggctccgcacgacatcctggccattaagggcgtcgaggag
ctggcggcttatctcgtcaacgagatccaggaggtctatcgcctccagggcgtgctcatc
aacgataagcacatcgaggtaatcgttcgtcagatgctgcagaaggtcgaaatcaccgac
agcggggattccgacttcctcacgggtgagcaggtcgatcgtctggaactcgaggaggcc
aacgagcgcctcgaggccgagaagaagaagcccgccgccggcgtgccggttctgctcggc
attaccaaggcttcgctccagacccgctccttcatctcggcggcgtccttccaggagacc
acccgcgtcctcacggaggcggcggtcaatggcaaggtcgataccctcgagggcctcaag
gagaacgtgatcgtcggcagcctcattccggccggcacgggcgccctgaacgcccaggtc
aaggccgtcgcccagcaccgggacgagctcatccttcagcagaagcgagccgaatcccaa
gctgcggtcaacgagttgccgcccgctgccgaatag
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integrated database retrieval system
