Microvirga sp. 17 mud 1-3: C4E04_12445
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Entry
C4E04_12445 CDS
T05470
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
miv
Microvirga sp. 17 mud 1-3
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
miv03016
]
C4E04_12445 (rnd)
Enzymes [BR:
miv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
C4E04_12445 (rnd)
Transfer RNA biogenesis [BR:
miv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
C4E04_12445 (rnd)
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AWM87460
UniProt:
A0A2Z3IGI9
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All DBs
Position
2599908..2601068
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AA seq
386 aa
AA seq
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MDLISTTDALRQACERLAAHPFVTVDTEFLRETTYYPRLCLIQMAGPDPADAVLVDPLAP
DMDLAPFMALMADRNVVKVFHSARQDLEIVWNLGQIVPEPLFDTQVAAMVCGYGDSVSYE
QLANDLAKARIDKSSRFTDWSRRPLTDAQLTYALSDVTHLVKVYEALAAQLEKNGRLAWL
DEEMAILSSPETYQADPENAWKRLAGRLRKSKEVAVLMEVAAWREREAQSRDVPRGRILK
DDALIDLAVSAPRSVEALGRLRTIPNGFERSRTGADILEAVSRGLARDPATVPMPERSRG
RGNTGAVVDLLKVLLKAVAEEEGVAPKIIATVDDLEAIAENDMADVTPLHGWRRALFGEK
ALALKNGQLGLVLERGRVKMREISAP
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggacttgatctctacgacagacgccctccgccaggcctgcgagcgcctcgccgcccat
ccgttcgtgaccgtcgatacggaattcctgcgcgagaccacttattaccccaggctctgc
ctgatccagatggctgggcccgatccggccgacgccgtgctggtcgacccgctggcgccc
gacatggacctggcgcccttcatggccctcatggcggaccggaatgtcgtgaaggtcttt
cactcggcgcgccaggacctggaaatcgtctggaatctcgggcagatcgtgcccgagccc
ctgttcgacacccaggtggccgccatggtgtgcggctacggtgattccgtatcctacgag
cagctcgccaacgacctcgccaaggcgcgtatcgacaagtcctcccgcttcaccgactgg
tcccgccgccccctgacggacgcccagcttacctatgcgctctcggatgtcacccatctg
gtgaaagtctacgaggccctggcggcccagcttgaaaagaacggccggctcgcctggctc
gacgaggagatggcgatcctctcatcgcccgagacctatcaggccgacccggaaaatgcc
tggaaacgcctcgccggacgcctgcgcaagtccaaggaagtggcggtgctcatggaggtg
gcggcctggcgcgagcgtgaggcccagagccgcgacgtgccgcgcgggcgcatcctgaag
gacgatgccctcatcgatctcgccgtatcggctccccgcagcgtggaagccctgggccgc
ctgcgcaccattcccaacggtttcgagcgctcccgcaccggggccgacatcctggaggcg
gtttcccgcggcctcgcccgcgaccccgcgaccgtgcccatgcccgaacgcagccgcggc
cgcggcaatacgggcgccgtggtcgacctcctgaaggtgctgctcaaggcggtcgccgag
gaggagggcgtggcccccaagatcatcgccacggtggacgacctcgaggccatcgccgaa
aacgatatggcggatgttacacccctgcacggatggcgtcgcgccctcttcggcgagaaa
gccctggcgctcaagaacggccagctcggcctcgtgctggagcgggggcgggtgaagatg
cgggagatttcagccccgtaa
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