Microvirga sp. 17 mud 1-3: C4E04_13590
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Entry
C4E04_13590 CDS
T05470
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4E04_13590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miv03019
]
C4E04_13590
Enzymes [BR:
miv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4E04_13590
Messenger RNA biogenesis [BR:
miv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4E04_13590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
P-loop_SecA
DUF2529
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
AWM87665
LinkDB
All DBs
Position
complement(2849603..2851075)
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AA seq
490 aa
AA seq
DB search
MTHFTDFGLAQPILKALAAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPI
LNRLNENPRARIRKSCRVLVLSPTRELAGQIADSFRVYGRNLKLTTSVVFGGVTIGKQER
ELSPGVDILVATPGRLLDLVDRKSLSLRDVEILVLDEADQMLDLGFIHALKRIVTLLPKD
RQSLFFSATMPKTISTLADAFLRDPAKVAVTPVATTAERVEQKVMFVSTGRKQALLEIVL
QDKSIDRVLVFTRTKHGADKVVRSLDKAGIAAAAIHGNKSQPQRERALSAFRNGTCRVLV
ATDIAARGIDVEGVSHVINYDLPNVPESYVHRIGRTARAGADGLAISFCNDEERAYLKDI
EKLTRMQVPVAALPEGFSAGPIGQEPQEPARKPQQQRGRPAPHARGHQGHGQSRDADPNA
ERGPRRRRGRSGQKPAGNGAQPNGSQQRPAQNAQGQRQPQRPSQGQPNRARNDGRRDGAQ
VAWLEKAPRR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
ttgactcacttcaccgatttcggattggcccagccgatcctgaaggccctggctgccgag
ggctacgagaagccgacgccgattcaggcccagaccattccctatgccatggaaggccgc
gacgtgtgcggcatcgcccagacgggaaccggcaagacggctgccttcgcgctgccgatc
ctcaaccgcctcaacgaaaatccccgtgcccgcatccgcaagagctgccgggtgctggtg
ctcagcccgacacgcgaactcgccggccagatcgccgacagcttccgcgtctatgggcgc
aacctgaagctcaccacctcggtggtgttcggcggtgtgaccattggcaagcaggagcgt
gagctctcgccgggcgtcgatatcctcgttgccacgccgggccgcctgctcgacctggtg
gaccgcaagtccttaagcctgcgcgatgtcgaaatcctcgtcctcgacgaggccgaccag
atgctcgatctcggcttcatccatgccttgaagcgcatcgtcaccctgcttccgaaggac
cgtcagagcctgttcttctcggccaccatgccgaagaccatctcgacgctcgccgatgcc
ttcctgcgcgatcccgccaaggtggccgtgacccccgtcgcgaccacggccgagcgcgtg
gagcagaaggtcatgttcgtgtcgaccggccgcaagcaggcgctgctcgagatcgtgctg
caggacaaatccatcgaccgcgtcctggtcttcacccgcaccaagcatggtgccgacaag
gttgtccggtccctggacaaggccggcattgcggctgcggccatccacggcaacaagtcc
cagccgcagcgcgaacgggctctttcggcattccgtaacggtacatgccgggtgctcgtg
gcgaccgacatcgcggcccgcggcatcgacgtggaaggcgtgagccacgtgatcaattac
gacctgccgaacgtgccggaatcctatgtccaccgcatcggccgcacggcccgggcgggg
gcggacgggctggcgatctcgttctgcaacgacgaagagcgcgcctatctcaaggacatc
gagaagctcacgcgcatgcaggtgccggttgcggcgctgcccgaaggcttctcggccggt
cccatcggccaggagccccaggagccagcgcgcaagccccagcagcagcgcggccgtccg
gctccccatgcccgcggccatcagggccacggtcagtcgcgggacgcggatccgaacgcg
gaacgcggtccccggcgtcgtcgtggtcgcagcgggcagaagcctgccggaaatggcgcc
cagccgaacggcagccagcagcgcccggcccagaacgctcagggccagcgccagccgcag
cggccgtcccagggccagccgaaccgcgcccgcaacgacgggcgccgggacggtgcccag
gtggcgtggctcgaaaaggctccgcgccgctga
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