Malacoplasma iowae: EER00_02995
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Entry
EER00_02995 CDS
T06673
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
miw
Malacoplasma iowae
Pathway
miw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
miw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EER00_02995 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
miw03021
]
EER00_02995 (rpoC)
03400 DNA repair and recombination proteins [BR:
miw03400
]
EER00_02995 (rpoC)
Enzymes [BR:
miw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EER00_02995 (rpoC)
Transcription machinery [BR:
miw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EER00_02995 (rpoC)
DNA repair and recombination proteins [BR:
miw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EER00_02995 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
FecR_C
Motif
Other DBs
NCBI-ProteinID:
QHG89836
UniProt:
A0A6P1LBN6
LinkDB
All DBs
Position
complement(1190406..1194248)
Genome browser
AA seq
1280 aa
AA seq
DB search
MSKSSRITSIQIGLASPEKIRQWSKGEVTKSETINYKSLKPEKGGLFDESIFGPMKDYEC
SCGKYKKIKFRGKVCEKCGVEITESIVRRERVGHIELAAPIAHIWMTKELPCPSKISLVL
DISYKEVEQVVYFVNYIVLDEGDSKFAKNFKFKEVIDLSSQKASKETRSKLRKTLREIYQ
TIDPESSVENKIKHNMGKTFYDTLGESNMPFSIEEVFNYISRYTGMKFGIGAEAILELLQ
KTDLDSEYDSINKRLKSQEITNDAKTKKLVRRLEAIKWLKDSNNKPEWMILKNIVVTPPD
TRPIIQLEGDKFTTSDINSFYRKIIIRNERLKRVIQNRAPSIILNNEKRLLQESVDALFD
NSSRKKPLLGKDKRPLKSLSEHLKGKQGLFRQNLLGKRVDYSGRSVIVIGPELKMYQVGI
PAIMILKLFKPFIIHELIKKTDDKGQPKDPIVSNIKSAEKLILNQANEIWPIVEKVIKQR
PVLLNRAPTLHRLGIQAFEPIMIEGKAIRLHPLVTTAFNADFDGDQMAVHVPLSPEAVAE
ARSIILASWHILGPKDGKPIITPTQDMVLGNYYLTMEKKKMVGEGILFSSIDEVKSIYAL
KKVHCHSIVGIPTSVFPKKKFPHDGILITTVGKIILNELLPEDMVYLNNPKNLETVDPAD
VVKFGEDFRKVIKDKTPYAPFSKKTLSEIVNKLHQNYDLQIVPKTMDKIKDLGFEYSTKS
ATTISAFDVPTYTDKQKYFDVADKKVEEYKKQYQKGLLTEGERYKRVVDTWQKVTENVSN
DIADLIKKPEYKENSIVIMADSGARGNNSNFTQLSGMRGLMSKSYNYDQKQKSKIIKDTI
EVPIKNSFIEGLTISEYFNSSYGARKGMTDTAMKTSKSGYMTRKLVDATQDVIVNEEDCG
TKRGIILEAIIDTKTGADIEKLEDRLINRFPLHDVTKPNGKTVIAKAGELITKEKAKEIV
DAGITQVEVRSVLHCKAEYGICQKCFGTDLTTNKLVEKYTAIGVIAAQSIGEPGTQLTMR
TFHTGGVSGGSNIAQGFERLKQLFDIILPKEWEKAIISEIKGKVTVNDDDKGRYVIVKNK
KESITYDIDIDSQIKVKTGDEVVPGSKLTEGSINIKDLLKVAGIEVVRNYIVKEVQKVYR
IQGIEIADKYVEVIIRQLTNKVQIQDAGDSKFFVGQIVDINIFRKENQKLVLNDKKSPAT
AVNLIFGLDEAPSKTGSFLAAASFQDTKKILTDASVKSEIDNLNGLKENVIFGNLIPCGT
GKKDSNEIIKLGDEMYKYEY
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagttctagaattacaagtattcaaattggtttagcatcacctgaaaaaatt
agacaatgatctaaaggtgaagttactaaatctgaaactattaactataaatctttaaag
ccagaaaaaggtggtttatttgatgaatcaatttttggtccaatgaaagattatgaatgt
tcttgtggtaaatataagaaaataaaattcagaggaaaagtctgtgaaaaatgtggtgtt
gaaataactgaatcaattgttagacgtgaacgtgttggtcatattgaacttgcagctcct
attgctcatatatgaatgacaaaagaacttccatgtccatctaaaatttctttagtttta
gatatttcttataaagaagttgaacaagtagtttattttgttaactacattgttttagat
gaaggtgattcaaaatttgctaaaaactttaagtttaaagaagttattgatttatcaagt
caaaaagcttctaaagaaacaagaagtaaattaagaaaaacattaagagaaatatatcaa
acaattgacccagaaagttcagtagaaaataaaattaaacacaatatgggtaaaactttc
tatgatactcttggtgaatctaatatgccattctcaattgaggaagtattcaactatatt
tcaagatacacaggtatgaaatttggtattggagctgaagcaattttagaattacttcaa
aaaactgatttagattctgaatatgattcaattaacaaaagacttaaatctcaagaaata
actaatgatgctaaaacaaaaaaattagttagaagacttgaagctataaaatgattaaaa
gattcaaataataaacctgaatgaatgattcttaaaaacatcgttgttactccacctgat
acaagaccaattattcaattagaaggtgataagtttactacaagtgatatcaacagtttt
tatagaaaaattattattagaaatgaacgtttaaaaagagttattcaaaatagagctcct
tcaattatcttaaataatgaaaagagattattacaagaatcagttgacgctttatttgat
aactcatcaagaaaaaaacctctacttggtaaagataaaagaccacttaaatcattatct
gaacacttgaaaggaaaacaaggtttattcagacaaaacttattaggtaaacgggtagac
tattctggtcgttctgttattgttataggacctgaattaaaaatgtatcaagttggtatt
ccagctattatgattttaaaattattcaaaccttttattattcatgaacttattaagaaa
acagatgataaaggtcaaccaaaagaccctatagtatctaacattaaatcagctgaaaaa
ttaattttaaatcaagcaaatgaaatttgaccaatagttgaaaaagtaattaaacaaaga
ccagttttattaaaccgtgcaccaacacttcaccgtttaggtattcaagcatttgaacct
attatgatcgaaggtaaagctattagattacatccgctagttaccacagcatttaatgct
gactttgacggtgaccaaatggctgttcatgttcctttatcacctgaagctgttgctgaa
gctagatcaattatattagcttcttgacatattctaggtccaaaagatggaaaaccaatt
attactccaacacaagatatggttttaggcaactattatctaactatggaaaaaaagaaa
atggttggtgagggaatattgtttagtagtattgatgaagttaaatcaatttatgctttg
aaaaaagttcattgtcactcaattgttggtattccaactagtgtattccctaaaaagaaa
ttcccgcacgatggtattttaataacaactgttggaaaaataattttaaacgaacttctt
ccagaagatatggtttatttaaataatccaaaaaatttagaaacagttgatccagcagac
gtagttaagtttggggaagactttagaaaagtaataaaagacaaaacaccttatgctcca
tttagcaaaaaaactttatctgaaattgtaaataaacttcaccaaaactatgatttacaa
atagtacctaagacaatggataaaattaaagacttaggttttgaatattcaacaaaatct
gcaacaacaatttcagcttttgatgttccaacttatacagataagcaaaaatattttgat
gtagctgataaaaaagttgaagaatataaaaaacaatatcaaaaaggtttattgactgaa
ggtgaaagatataaacgtgttgttgatacatgacaaaaagtaactgaaaatgtttcaaac
gatattgctgatttaattaaaaaacctgaatataaagaaaactcaattgtaattatggca
gactctggtgcaagaggtaacaactctaactttacacagttatcaggtatgcgtggattg
atgagtaagtcatataactatgaccaaaaacaaaaatctaaaattataaaagatacaatt
gaagttccaattaaaaattcatttattgaaggtttaacaattagtgaatacttcaacagt
tcatatggtgctagaaaaggtatgacagatactgccatgaaaacttcaaaatcaggttac
atgactagaaaattagttgatgcgactcaagatgttattgttaatgaagaggattgtgga
acaaaacgtggtatcattcttgaggcaattattgatactaaaacaggtgctgatattgaa
aaattagaagatagattaattaatagattcccattacatgatgtaacaaaaccaaatggt
aaaacagttatagctaaagctggtgaattaatcactaaagaaaaagctaaagaaattgtt
gatgcaggtataactcaagtagaagttagaagtgttcttcactgtaaagcagaatatggt
atttgtcaaaaatgttttggtactgaccttacaacaaataaattagttgaaaagtacaca
gcaattggtgtaattgcagctcaatctattggtgaacctggtacacaattaacaatgcgt
acgttccatactggtggggtttcaggtggaagtaacattgcccaaggttttgaaagatta
aaacaattatttgatatcattctgccaaaagaatgagaaaaagcaatcatttctgaaatt
aaaggtaaagtaacagttaatgatgatgacaaaggtagatatgtaattgttaaaaacaaa
aaagaatcaatcacatatgatattgatattgatagccaaatcaaagttaaaacaggggat
gaagttgttccaggttctaaactaactgaaggttcaatcaacattaaagatctacttaaa
gttgctggtatagaagttgtaagaaactatatagttaaagaagttcaaaaagtttatcgt
attcaaggtattgaaattgcagataaatatgtagaagttattatcagacaattaactaac
aaagttcaaattcaagatgctggtgattctaaattcttcgttggtcaaattgttgatatc
aatatctttagaaaagaaaaccaaaaacttgttttaaatgataaaaaaagtccagcaaca
gctgtaaacttaatctttggattagatgaagcaccaagcaaaactggttcattccttgca
gcagcttcattccaagatacaaagaaaattcttactgatgcttcagttaagagtgaaatt
gataaccttaatggtttaaaagaaaatgttatctttggtaaccttattccttgtggtaca
ggtaaaaaagattctaatgaaatcatcaaacttggtgatgaaatgtacaaatatgaatat
taa
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