KEGG   Methylocystis iwaonis: SS37A_02090
Entry
SS37A_02090       CDS       T09113                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
miwa  Methylocystis iwaonis
Pathway
miwa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:miwa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SS37A_02090 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:miwa03021]
    SS37A_02090 (rho)
   03019 Messenger RNA biogenesis [BR:miwa03019]
    SS37A_02090 (rho)
Transcription machinery [BR:miwa03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SS37A_02090 (rho)
Messenger RNA biogenesis [BR:miwa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SS37A_02090 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT ATPase_2 AAA Fungal_virus_P2_C Spore_III_AA AAA_14
Other DBs
NCBI-ProteinID: BDV32680
UniProt: A0ABM8E410
LinkDB
Position
221959..223224
AA seq 421 aa
MREIKLSDLKAKSAAELLAFAEEHEVENASLLRKQELLFAILKQFASRDVEIVGEGVVEV
LQDGFGFLRSPDANYLAGPDDIYVSPSQIRKFGLRTGDTVEGMIRSPKEGERYFALLKVN
TINFEDPEKVRHKVPFDNLTPLYPDERLKLEIEDPTKKDLSARVIDLVAPIGKGQRALVV
APPRTGKTVLLQNIAQSITTNHPECYLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHRRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPA
IDITRSGTRKEDLLVATDILKKMYVLRRILNPMGTVDAIEFLLGKLRETKGNQAFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatcaaactttcggatttaaaggctaaatccgctgccgagctccttgctttc
gctgaggagcatgaagttgaaaatgcttccctgctccgcaagcaggaattgcttttcgcg
atcctcaaacaatttgccagccgcgacgtcgaaatcgtcggcgagggcgttgtcgaggtc
ttgcaggacggcttcggcttcctgcgttcgcccgacgccaattatctggccggtccagac
gacatctatgtgtcgccgtcgcagattcgcaaattcggcctgcgcaccggcgatactgtt
gaaggcatgattcgcagcccgaaggaaggcgaacgttactttgcgcttctcaaggtcaat
acgatcaatttcgaggatccggagaaggtgcgccacaaggtgcccttcgacaatctgacg
ccgctctatcccgatgagcgcctgaagctcgaaatcgaggatccgacgaagaaggacctc
tcggcgcgcgtcatcgatctcgtggcgccgatcggcaaaggccagcgcgccctcgtcgtc
gcgccgccgcgcaccggtaagaccgtgttgctgcaaaatatcgcgcagtcgatcacgacc
aaccatcccgaatgctacctgatcgtgctgctcatcgacgagcgtcccgaggaagtgacc
gacatgcagcgctccgtgcgcggcgaagtggtctcctcgaccttcgacgaaccggcggtg
cgccacgtgcaagtcgcggaaatggtgatcgagaaggccaagcgtcttgtcgaacaccgt
cgcgatgtggtgattctgctcgactcgatcacgcgcctgggccgcgcctacaatacggtg
gtgccctcttccggcaaggttctgacgggcggcgtcgacgccaacgccctgcagcggccg
aagcgcttcttcggcgcggcgcgcaacatcgaggaaggcggctcgctgacgatcattgcg
acggcgctgatcgacaccggctcgcgcatggacgaagtcatcttcgaagagttcaaaggc
accggcaacagcgagatcattctcgatcgcaaggtctccgacaagcgtgtcttcccggcg
atcgacatcacgcgctccggcacccgcaaagaggatttgctcgtcgccacggacatcctc
aaaaagatgtatgtcctgcgccgcatcctcaatccgatgggcacggtcgacgcgatcgaa
ttcctgctcggcaagctgcgtgagacgaagggcaatcaggccttcttcgattcgatgaac
acgtaa

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