Methylocystis iwaonis: SS37A_03500
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Entry
SS37A_03500 CDS
T09113
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS37A_03500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miwa03019
]
SS37A_03500
03400 DNA repair and recombination proteins [BR:
miwa03400
]
SS37A_03500
Enzymes [BR:
miwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SS37A_03500
Messenger RNA biogenesis [BR:
miwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SS37A_03500
DNA repair and recombination proteins [BR:
miwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SS37A_03500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDV32821
LinkDB
All DBs
Position
complement(378587..380152)
Genome browser
AA seq
521 aa
AA seq
DB search
MADAARRLLRDVFGFADFLPGQEEVIEAILAGRDALAVMPTGSGKSLLYQLPAAAGPGLV
VVASPLIALMRDQLRAMADKDVPAVALHSAQDDAEAIAALDVVATGRARLLYAAPERLAQ
EATQDLLRKNRIKLFAVDEAHCVSHWGHDFRPDYRGLGDIATRLGAPVLAVTATAGPRTR
ADIKRSLFAREPDVFIRSFARPNLALSFRRKRAGLRQILRFIGQGRESGIVYCNSRRKAD
ALAAGLAASGLDALPYHAGLDAYTRDAHQDAFFARRGVVMVATIAFGMGVDKPDVRFVIH
ADLPTSIEGYYQEIGRAGRDGAPARALALFDPRELATRWRTPQIDPENEEAAGDYARRQA
MARLCVTPRCRFQTLLAEFGEESAPCGRCDHCRGGPLAWPRRAGALALQLRGTAASRLAY
LSGEEIDEPSAPTVPQEAVFEPAAPPAIALTVSQARLLRALQAERGKIAKRRRLAPRRIA
SDATLAALAAARPHRIDDPIFHDVEEASAFLCVIEKANAEG
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccgcgcgccgcttgctgcgtgatgttttcggcttcgccgattttcttccg
ggccaagaggaagtcatcgaggccatcctcgccggtcgcgacgcgctcgccgtcatgccg
acgggctccggcaaatccctgctctatcaattgcccgcggcggcggggccgggcctcgtc
gtcgtcgcctccccgctcatcgccctgatgcgcgaccagttgcgggcgatggcggacaaa
gacgttcccgccgtcgcgctacattccgcccaggacgacgccgaggcgatcgccgcactg
gacgtcgtcgcgacagggcgggcgagactcctctacgccgcgcccgagcggctggctcag
gaagcgacgcaggatttgctgcgcaaaaaccgcatcaagcttttcgcggtggacgaagcc
cattgcgtctcgcattggggacacgacttccgcccggactatcgcgggctcggcgacatc
gcgacgaggctcggcgcgccggtgctcgccgtcacggccaccgccggaccgcgcacgcgc
gcggacatcaaacgcagtctttttgcgcgggagccggacgtctttattcgttccttcgcc
cggcccaacctcgccctctctttccggcgcaagcgcgcggggctgcgccagatcctgcgc
ttcatcgggcagggacgggaaagcggcatcgtctactgcaattcgcgccgcaaagcggat
gcgctcgccgccggcctcgccgcttcggggctcgatgctttgccctatcacgccggcctc
gacgcctatacgcgcgacgcccatcaggacgcgtttttcgcgcgcaggggcgtcgtcatg
gtcgcgaccatcgctttcggcatgggggtggataagccggacgtgcgcttcgtgatccac
gccgatctgcccacctcgatcgagggctattaccaggagatcggccgcgccgggcgcgat
ggggcgccggcgcgcgccctggctttgttcgatccgcgcgaattggcgacccgctggcga
acgccgcagatcgacccagaaaacgaagaagcggccggggattatgcccgccgccaggcc
atggcgcggctctgcgtgacgccccgctgccgcttccagactttgcttgccgaattcggc
gaggaaagcgcgccttgcggtcggtgcgatcattgccggggcgggccgctggcctggccg
cgccgggcaggcgctttggcgcttcagcttcgaggcacggcggcgagccggcttgcatat
ctctcgggcgaggaaatcgacgaaccgtcggcgcccacggtcccccaagaggctgttttc
gaaccagccgcgcctcccgccatcgcgctcacggtctcgcaggcgcggctgctgcgcgcg
ctgcaagccgagcgggggaaaatcgccaaaaggcgccgcctggcccccaggcgcatcgcc
agtgacgcgactctcgccgccctcgccgcggcgcggccgcaccgaatcgacgacccgatc
ttccacgacgtcgaggaggcgagcgcttttctgtgcgtcatcgaaaaggcgaatgccgag
gggtga
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