KEGG   Methylocystis iwaonis: SS37A_09410
Entry
SS37A_09410       CDS       T09113                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
miwa  Methylocystis iwaonis
Pathway
miwa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:miwa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SS37A_09410 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:miwa03021]
    SS37A_09410 (rpoC)
   03400 DNA repair and recombination proteins [BR:miwa03400]
    SS37A_09410 (rpoC)
Enzymes [BR:miwa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SS37A_09410 (rpoC)
Transcription machinery [BR:miwa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SS37A_09410 (rpoC)
DNA repair and recombination proteins [BR:miwa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SS37A_09410 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Biotin_lipoyl_2 RnfC_N
Other DBs
NCBI-ProteinID: BDV33412
LinkDB
Position
complement(988902..993077)
AA seq 1391 aa
MNQQEVMNLFNPVVATQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYIVIDPGLTPLKERQLLSEEEYLTAQDEYGQDHFT
AMIGAEAIRRLLESMDLEGIAASLRQEIAEAKTELKPKKLAKRLKIIEAFTQSGNRPEWM
ILKEIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGYSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLTQERDGEPGQGMCFANQGEIEHAL
AAKAITLHSKIKGRGWTYDAAGNRVAKIFDTTPGRMMLGQLMPRHNKIPYDVVNKLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMAMGFREAFKAGISFGKDDMVVPETKERIVGETRA
AAKEYEQQYNDGLITQGEKYNKVVDAWAKCAEKLAEEMMQRISAVRKDDAGRDMPINSIY
MMSHSGARGSPTQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIISSTDCGSTGGIRMRAIIDAGQIVASLASRILGRT
AAEDLKAQDGSVIVPAGEMIQEWHLDPITKAGIQEVKIRSVLTCEAKNGVCAKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADQSFLESNFEGTVHIRNRHV
ARNSDGDLIVMARNVAVVILGPDGTERAATRILYGARLKVDDGDQVKRGQRLAEWDPYTR
PIISEVDGAIGFEDLVEGQSLAETVDESTGIAKRMVMDYRLNLRSASLKPSIVIKGPDGK
VAKLQRGGDARYLLPVDSIIAVEPGGTVKAGDIVARISVESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEVSGTVQFGKDYKNKQRLSIVPSEDGAEPVEYLIPKGKHIHLQDGDVVEK
GDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKIDI
VDPGDTGFLEGEQVDKLELEEANAKAIENGGKPGHGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLVGLKENVIVGRLIPAGTGAAMAKYRGIAGGRDELIITQRAEG
VEPAPALPPAE
NT seq 4176 nt   +upstreamnt  +downstreamnt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtggcgacgcaggccttcgac
cagattcagatttcgatcgcgagcccggagaagattctctcctggtccttcggcgaaatc
aaaaagcccgagacaatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgc
gcccgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatg
aagtacaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctggcgcgcgtgcgg
cgcgaccgcatgggccatatctcgctcgccgcgcccgtcgcgcacatctggttcctgaag
tcgctgccctcgcgcatcggccttctgctcgacatgacgctgaaggacctcgagcgcatc
ctctacttcgagtcctatatcgtcatcgatccgggcctcacgccgctcaaggagcgccag
ctcctgtcggaagaggaatatctgacggcgcaggacgaatatggccaggatcacttcacg
gccatgatcggcgcagaggcgatccgccgcctgctcgagtcgatggacctcgaaggcatc
gccgcgagcctgcgtcaggagatcgccgaggcgaagaccgagctgaagcccaagaagctc
gccaagcgtctcaagatcatcgaggccttcacccagtcgggcaaccgcccggaatggatg
atcctgaaagagatcccggtcattccgccggatctgcgtccgctcgtgccgctcgacggc
ggccgcttcgcgacgtcggacctcaacgatctctaccgccgcgtcatcaaccgtaacaat
cgcctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcgc
atgctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacg
ggcgccaataagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgc
ttccgccagaacctgctcggcaagcgcgtcgactactccggccgctcggtcatcgtcgtg
ggtccggagctgaagctgcatcaatgcggcctgcccaagaagatggcgctggagctgttc
aagcccttcatctattcgcgcctcgacgcgaagggctattcggcgaccgtcaagcaggcg
aagaagctcgtcgagaaggaaaagcccgaggtttgggatatcctcgacgaggtcattcgc
gagcatccggtgctgctgaaccgcgcgcccacgctgcaccgtctcggcattcaggccttc
gagccggtgctgatcgagggcaaggcgatccaactgcatccgctcgtctgcgcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcag
ttggaagcgcgcgtgctgatgatgtcgacgaacaacatcctgcacccggccaatggtcag
ccgatcatcgtgccgtcccaggacattgttctcggcctctattatctcacgcaggagcgc
gacggcgagccgggccagggcatgtgcttcgccaatcagggcgagatcgagcatgcgctc
gcggccaaggcgatcacgctgcacagcaagatcaaaggccgcggctggacctatgacgcg
gcgggcaatcgcgtggcgaaaatcttcgacacgacgccgggccgcatgatgctcggccag
ctcatgcccaggcacaacaagattccctacgacgtcgtcaacaagctgatgaccaagaag
gaaatctcgaacatgatcgacaccgtctaccgcaactgcggtcagaaggagacggtcatt
ttctgcgaccgcatcatggcgatgggcttccgcgaagccttcaaggccggcatttccttc
ggtaaggacgacatggtcgtgccggagacgaaggagcgcatcgtcggcgagacgcgcgcc
gccgccaaggaatatgagcagcagtacaacgacggcctcatcacccagggcgagaaatac
aacaaggtcgtcgacgcctgggcgaaatgcgccgagaagctggccgaggagatgatgcag
cgcatctccgccgtccgtaaggacgatgcgggacgcgatatgcccatcaactcgatctat
atgatgtcgcactcgggcgcgcgcggttcgccgacgcagatgcgccagctcgccgccatg
cgcggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgacggttctcgaatacttcaactccacccacggcgcccgtaagggcctg
gcggacacggcgttgaagaccgcgaactcgggttacctcacgcgccgcctcgtcgacgtc
gcgcaggattcgatcatctcctcgacggattgcggctccacgggcggcatccgtatgcgg
gcgattatcgacgccggccagatcgtcgcctcgcttgcgtcgcgcatcctcggccgcacg
gccgcggaggatttgaaggcgcaggatgggtcggtgatcgtgcccgcgggcgagatgatc
caagaatggcatctcgatccgatcacgaaggctggcattcaggaggtcaagatccgttcg
gtcctcacctgcgaggccaagaacggcgtctgcgccaaatgctacggtcgcgaccttgcg
cgcggcacgcccgtcaatatgggcgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctcaccatgcgcaccttccacatcggcggcgcggcgcagcttgct
gaccagtccttcctggagtcgaacttcgaaggcacggttcacatccgcaaccgtcacgtc
gctcgaaactccgacggcgatctgatcgtcatggcgcgtaacgtcgccgtggtgatcctc
ggccccgacggaacggagcgcgcggccacccgtatcctctacggcgcgcgcttgaaggtc
gacgacggcgatcaggtgaagcgcggccagcgcctcgccgaatgggacccctacacccgt
cccatcatctccgaggtggacggcgccatcggcttcgaggatctcgtcgaaggccagtcg
ctggcggaaacggtcgacgagtcgaccggcatcgccaagcgcatggtcatggactatcgc
ctcaacctccgctcggcgagcctcaagccctcgatcgtcatcaagggcccggacggcaag
gtcgccaagctgcaacgcggcggcgacgcccgctatctgctgcccgtcgactcgatcatc
gcggtcgagcccggcggcacggtgaaggccggcgacattgtcgcgcgtatttcggtggag
agcgccaagacccgcgacatcaccggcggtctgccgcgcgtcgccgaactcttcgaagcg
cgccgtccgaaggatcacgcgatcatcgcggaagtctccggcacggtgcagttcggtaag
gactacaagaacaagcagcgtctcagcatcgtgccgtcggaagacggcgcggagccggtc
gaatatctgatcccgaagggcaagcatattcaccttcaggacggggacgtcgtcgagaag
ggcgattacatcgtcgacggcaatccggcgccgcacgacattctggcgatcaagggcgtg
gaggagcttgccgcttacctcgtcaacgagatccaggaggtctatcgtctgcagggcgtg
aacatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaagatcgacatc
gtcgatccgggcgacaccggcttcctcgaaggcgagcaggtcgataagctcgagctcgaa
gaggcgaacgccaaggcgatcgagaacggcggcaagcccgggcacggcactccggtgctg
ctcggcatcaccaaggcctcgctgcagacgcggtccttcttctccgccgcctccttccag
gagacgacgcgcgtcctcaccgaggccgcggtcaacggcaagatcgacccgctcgtcggc
ctcaaggagaacgtcatcgtcggccgtctcatcccggccggcaccggcgcggcgatggcc
aaataccgcggcatcgccggcgggcgtgacgaactcatcatcacgcagcgcgcggaaggc
gtcgaacctgccccggccctgccgccggcggagtga

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