Methylocystis iwaonis: SS37A_09410
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Entry
SS37A_09410 CDS
T09113
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SS37A_09410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
miwa03021
]
SS37A_09410 (rpoC)
03400 DNA repair and recombination proteins [BR:
miwa03400
]
SS37A_09410 (rpoC)
Enzymes [BR:
miwa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SS37A_09410 (rpoC)
Transcription machinery [BR:
miwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SS37A_09410 (rpoC)
DNA repair and recombination proteins [BR:
miwa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SS37A_09410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BDV33412
LinkDB
All DBs
Position
complement(988902..993077)
Genome browser
AA seq
1391 aa
AA seq
DB search
MNQQEVMNLFNPVVATQAFDQIQISIASPEKILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLARVRRDRMGHISLAAPVAHIWFLK
SLPSRIGLLLDMTLKDLERILYFESYIVIDPGLTPLKERQLLSEEEYLTAQDEYGQDHFT
AMIGAEAIRRLLESMDLEGIAASLRQEIAEAKTELKPKKLAKRLKIIEAFTQSGNRPEWM
ILKEIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPELKLHQCGLPKKMALELFKPFIYSRLDAKGYSATVKQAKKLVEKEKPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLTQERDGEPGQGMCFANQGEIEHAL
AAKAITLHSKIKGRGWTYDAAGNRVAKIFDTTPGRMMLGQLMPRHNKIPYDVVNKLMTKK
EISNMIDTVYRNCGQKETVIFCDRIMAMGFREAFKAGISFGKDDMVVPETKERIVGETRA
AAKEYEQQYNDGLITQGEKYNKVVDAWAKCAEKLAEEMMQRISAVRKDDAGRDMPINSIY
MMSHSGARGSPTQMRQLAAMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDSIISSTDCGSTGGIRMRAIIDAGQIVASLASRILGRT
AAEDLKAQDGSVIVPAGEMIQEWHLDPITKAGIQEVKIRSVLTCEAKNGVCAKCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLADQSFLESNFEGTVHIRNRHV
ARNSDGDLIVMARNVAVVILGPDGTERAATRILYGARLKVDDGDQVKRGQRLAEWDPYTR
PIISEVDGAIGFEDLVEGQSLAETVDESTGIAKRMVMDYRLNLRSASLKPSIVIKGPDGK
VAKLQRGGDARYLLPVDSIIAVEPGGTVKAGDIVARISVESAKTRDITGGLPRVAELFEA
RRPKDHAIIAEVSGTVQFGKDYKNKQRLSIVPSEDGAEPVEYLIPKGKHIHLQDGDVVEK
GDYIVDGNPAPHDILAIKGVEELAAYLVNEIQEVYRLQGVNINDKHIEVIVRQMLQKIDI
VDPGDTGFLEGEQVDKLELEEANAKAIENGGKPGHGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKIDPLVGLKENVIVGRLIPAGTGAAMAKYRGIAGGRDELIITQRAEG
VEPAPALPPAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagcaagaggtcatgaatctcttcaatccggtcgtggcgacgcaggccttcgac
cagattcagatttcgatcgcgagcccggagaagattctctcctggtccttcggcgaaatc
aaaaagcccgagacaatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgc
gcccgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcgcatg
aagtacaagggcgtcatctgcgagaagtgcggcgtcgaagtcacgctggcgcgcgtgcgg
cgcgaccgcatgggccatatctcgctcgccgcgcccgtcgcgcacatctggttcctgaag
tcgctgccctcgcgcatcggccttctgctcgacatgacgctgaaggacctcgagcgcatc
ctctacttcgagtcctatatcgtcatcgatccgggcctcacgccgctcaaggagcgccag
ctcctgtcggaagaggaatatctgacggcgcaggacgaatatggccaggatcacttcacg
gccatgatcggcgcagaggcgatccgccgcctgctcgagtcgatggacctcgaaggcatc
gccgcgagcctgcgtcaggagatcgccgaggcgaagaccgagctgaagcccaagaagctc
gccaagcgtctcaagatcatcgaggccttcacccagtcgggcaaccgcccggaatggatg
atcctgaaagagatcccggtcattccgccggatctgcgtccgctcgtgccgctcgacggc
ggccgcttcgcgacgtcggacctcaacgatctctaccgccgcgtcatcaaccgtaacaat
cgcctgaagcggctgatcgagctgcgcgcgccggacatcatcatccgcaacgaaaagcgc
atgctgcaggaggccgtcgacgcgctgttcgacaacggccgccgcggccgcgtcatcacg
ggcgccaataagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcagggccgc
ttccgccagaacctgctcggcaagcgcgtcgactactccggccgctcggtcatcgtcgtg
ggtccggagctgaagctgcatcaatgcggcctgcccaagaagatggcgctggagctgttc
aagcccttcatctattcgcgcctcgacgcgaagggctattcggcgaccgtcaagcaggcg
aagaagctcgtcgagaaggaaaagcccgaggtttgggatatcctcgacgaggtcattcgc
gagcatccggtgctgctgaaccgcgcgcccacgctgcaccgtctcggcattcaggccttc
gagccggtgctgatcgagggcaaggcgatccaactgcatccgctcgtctgcgcggccttc
aacgccgacttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcag
ttggaagcgcgcgtgctgatgatgtcgacgaacaacatcctgcacccggccaatggtcag
ccgatcatcgtgccgtcccaggacattgttctcggcctctattatctcacgcaggagcgc
gacggcgagccgggccagggcatgtgcttcgccaatcagggcgagatcgagcatgcgctc
gcggccaaggcgatcacgctgcacagcaagatcaaaggccgcggctggacctatgacgcg
gcgggcaatcgcgtggcgaaaatcttcgacacgacgccgggccgcatgatgctcggccag
ctcatgcccaggcacaacaagattccctacgacgtcgtcaacaagctgatgaccaagaag
gaaatctcgaacatgatcgacaccgtctaccgcaactgcggtcagaaggagacggtcatt
ttctgcgaccgcatcatggcgatgggcttccgcgaagccttcaaggccggcatttccttc
ggtaaggacgacatggtcgtgccggagacgaaggagcgcatcgtcggcgagacgcgcgcc
gccgccaaggaatatgagcagcagtacaacgacggcctcatcacccagggcgagaaatac
aacaaggtcgtcgacgcctgggcgaaatgcgccgagaagctggccgaggagatgatgcag
cgcatctccgccgtccgtaaggacgatgcgggacgcgatatgcccatcaactcgatctat
atgatgtcgcactcgggcgcgcgcggttcgccgacgcagatgcgccagctcgccgccatg
cgcggcctgatggccaagccctcgggcgagatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgacggttctcgaatacttcaactccacccacggcgcccgtaagggcctg
gcggacacggcgttgaagaccgcgaactcgggttacctcacgcgccgcctcgtcgacgtc
gcgcaggattcgatcatctcctcgacggattgcggctccacgggcggcatccgtatgcgg
gcgattatcgacgccggccagatcgtcgcctcgcttgcgtcgcgcatcctcggccgcacg
gccgcggaggatttgaaggcgcaggatgggtcggtgatcgtgcccgcgggcgagatgatc
caagaatggcatctcgatccgatcacgaaggctggcattcaggaggtcaagatccgttcg
gtcctcacctgcgaggccaagaacggcgtctgcgccaaatgctacggtcgcgaccttgcg
cgcggcacgcccgtcaatatgggcgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagctcaccatgcgcaccttccacatcggcggcgcggcgcagcttgct
gaccagtccttcctggagtcgaacttcgaaggcacggttcacatccgcaaccgtcacgtc
gctcgaaactccgacggcgatctgatcgtcatggcgcgtaacgtcgccgtggtgatcctc
ggccccgacggaacggagcgcgcggccacccgtatcctctacggcgcgcgcttgaaggtc
gacgacggcgatcaggtgaagcgcggccagcgcctcgccgaatgggacccctacacccgt
cccatcatctccgaggtggacggcgccatcggcttcgaggatctcgtcgaaggccagtcg
ctggcggaaacggtcgacgagtcgaccggcatcgccaagcgcatggtcatggactatcgc
ctcaacctccgctcggcgagcctcaagccctcgatcgtcatcaagggcccggacggcaag
gtcgccaagctgcaacgcggcggcgacgcccgctatctgctgcccgtcgactcgatcatc
gcggtcgagcccggcggcacggtgaaggccggcgacattgtcgcgcgtatttcggtggag
agcgccaagacccgcgacatcaccggcggtctgccgcgcgtcgccgaactcttcgaagcg
cgccgtccgaaggatcacgcgatcatcgcggaagtctccggcacggtgcagttcggtaag
gactacaagaacaagcagcgtctcagcatcgtgccgtcggaagacggcgcggagccggtc
gaatatctgatcccgaagggcaagcatattcaccttcaggacggggacgtcgtcgagaag
ggcgattacatcgtcgacggcaatccggcgccgcacgacattctggcgatcaagggcgtg
gaggagcttgccgcttacctcgtcaacgagatccaggaggtctatcgtctgcagggcgtg
aacatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaagatcgacatc
gtcgatccgggcgacaccggcttcctcgaaggcgagcaggtcgataagctcgagctcgaa
gaggcgaacgccaaggcgatcgagaacggcggcaagcccgggcacggcactccggtgctg
ctcggcatcaccaaggcctcgctgcagacgcggtccttcttctccgccgcctccttccag
gagacgacgcgcgtcctcaccgaggccgcggtcaacggcaagatcgacccgctcgtcggc
ctcaaggagaacgtcatcgtcggccgtctcatcccggccggcaccggcgcggcgatggcc
aaataccgcggcatcgccggcgggcgtgacgaactcatcatcacgcagcgcgcggaaggc
gtcgaacctgccccggccctgccgccggcggagtga
DBGET
integrated database retrieval system