Methylocystis iwaonis: SS37A_10260
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Entry
SS37A_10260 CDS
T09113
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
miwa
Methylocystis iwaonis
Pathway
miwa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SS37A_10260 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
miwa03021
]
SS37A_10260 (sigA)
Transcription machinery [BR:
miwa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SS37A_10260 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF4168
LPD39
DUF4351
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
BDV33497
UniProt:
A0ABM8E6M9
LinkDB
All DBs
Position
1088210..1090228
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AA seq
672 aa
AA seq
DB search
MAKKDEDKVDNEGAVTADAADGPLLDLNDAAVKRMIKSAKKRGFVTYAELNAVLPSEEVS
SDQIEDVYAMLSEMGITVSEGEDPDDAEEEQAAEEEEAEGGELVENTRATAVATRSSEPA
DRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWREEL
EAGKVLLRDIIDLEATYAGPEGKAGAKPAEEEEGEGGEMAPATAPRTPPAGLAEGAPSEE
TFEEEDDMENSVSLSAMEAELKPKVLETFARVADAYKKLRRLQDQNVENKLKNETLTPAQ
ERKYKQLKKEIVTDVKSLSLNQNRIEALVEQLYDINKRLIGYETKLLRLADSYGVAREDF
FDKFHGSELDPKWVMRVAQLRSKGWKEFVAEEKDRIKDLRAEIHALATETGLEISEFRKI
VHMVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE
ELAEKLAMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVLPIEAAIQSNLR
ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP
SRSRKLRSFLDN
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaagacgaagacaaggtcgataatgaaggcgccgtgacggcagacgccgcc
gacgggccgcttctcgacctcaatgacgccgccgtcaagcggatgatcaagtccgccaaa
aagcgcggcttcgtcacctatgccgaattgaacgccgtcctgccgtcggaggaggtttcc
tccgaccagatcgaggacgtctacgcgatgctctccgaaatgggcatcaccgtctccgag
ggcgaggatccggacgacgccgaggaagagcaggccgccgaggaagaggaagccgagggc
ggcgagctcgtcgagaacacgcgcgcgacggcggtggccacgcgttcctccgagccggcc
gatcgcaccgacgacccggtgcgcatgtatctgcgcgaaatggggtcggtcgagctgctc
tcgcgcgagggcgaaatcgccatcgccaagcgtatcgaggccggccgcgaggcgatgatc
gcgggcctctgcgagagcccgctgaccttccaggcgatcatcatctggcgcgaggagctc
gaggccggaaaggttctgctgcgcgatatcatcgacctcgaggcgacctacgccggcccc
gagggcaaggcgggcgcgaaacccgccgaggaggaagagggcgagggcggcgagatggcg
ccggccaccgcgccgcgcacgccgccagcaggtcttgccgaaggcgctccctcagaggaa
accttcgaggaagaagacgacatggagaattccgtgtcgctctcggccatggaggccgag
ctgaagcccaaggttctggaaaccttcgcgcgcgtcgccgacgcctataagaagctgcgc
cgcctgcaggaccagaatgtcgagaacaagctcaagaacgagacgctgacgcccgctcag
gagcgcaaatacaagcagctcaagaaagagatcgtcaccgacgtcaagtctctttccctg
aaccagaatcgcatcgaggcgctggtcgagcagctctacgacatcaacaagcgtctcatc
ggctatgagacgaagctgttgcgccttgccgacagctatggcgtcgcgcgcgaggacttc
ttcgacaagttccacggctccgagctcgaccccaaatgggtgatgcgcgtcgcgcagctt
cgctccaagggctggaaggaattcgtcgccgaagagaaggaccgcatcaaggatctgcgc
gccgaaatccatgcgctggcgaccgagacgggcttggagatctccgagttccgcaagatc
gtgcatatggtgcagaagggcgagcgcgaggcccgtcaggcgaagaaggagatggtcgag
gccaatctgcgcctcgtcatctctatcgccaagaaatacaccaaccgcggcctgcagttc
ctcgacctcattcaggaaggcaatatcggcctgatgaaggcggtcgataagttcgaatat
cgccgcggctacaaattctcgacctacgccacctggtggattcgtcaggcgatcacgcgc
agcatcgcggatcaagcgcgaacgattcgcattccggtgcatatgatcgagacgatcaac
aagatcgtgcgcacctcgcgccagatgctgcacgagatcggccgcgagccgaccccggag
gagctggccgaaaagctcgccatgccgctcgaaaaagtgcgcaaggtgctcaaaatcgcc
aaggagccgatctcgctcgaaacgccgatcggcgacgaggaggattcgcatctcggcgat
ttcatcgaggacaagaacgccgtgctgccgatcgaggcggcgatccagtcgaatctacgc
gagacgacgacccgcgttctggcttcgctgacgccgcgcgaggagcgcgtgctgcgcatg
cgcttcggcatcggcatgaacaccgaccacacgctggaggaagtcggccagcagttctcg
gtgacccgcgagcgtatccgccagatcgaggcgaaggcgctgaggaagctgaagcatccg
agccggtcgaggaagctgcggagcttcttggataactga
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