Methylocystis iwaonis: SS37A_18850
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Entry
SS37A_18850 CDS
T09113
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS37A_18850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miwa03019
]
SS37A_18850
03009 Ribosome biogenesis [BR:
miwa03009
]
SS37A_18850
Enzymes [BR:
miwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS37A_18850
Messenger RNA biogenesis [BR:
miwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SS37A_18850
Ribosome biogenesis [BR:
miwa03009
]
Prokaryotic type
rRNA helicases
SS37A_18850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDV34356
LinkDB
All DBs
Position
complement(1986972..1988705)
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AA seq
577 aa
AA seq
DB search
MTFFDASPALARALEERNYTAATPVQAAVLAQARSGDMLVSAQTGSGKTVAYGLAIAPTI
LGDTGQIADARAPIALIVAPTRELALQVERELSWLYKYAGARIVACVGGMDARLERRKLS
EGAHIVVGTPGRLRDHIERGGLNASMLKAVVLDEADEMLDLGFREDLEFILEASPVERRT
LMFSATMPKGIAALARRYQRDAQRIDVAGGSRGHSDIEYRAIRVAPHETELVTVNLLRYF
EAPTAIVFCNTRESVRHLHATLLERGFSAALLSGELSQHERNHSMQALRDGRARVCVATD
VAARGIDLPNLDLVIHADLPHDVEALQHRSGRTGRAGRKGVSALLIPASRRRRAERLLAD
AGVGAHWSGPPTAQQILDLDQDRMLKDPLLTETPTEDDFHMAELLLAERTPEQIGAALVR
LYRSRLPSIEEVVDPGEEPARRDTRSKPRLSATQMCEEARKRPPSVSLSEPGVWFRLDIG
RKKNADPKWLLPMLCRKGDVARQDIGVIRIFDHETKVEISSRAAAQFAANMRRPGGDNIR
VERLSGSSEGKSRNDATPKRQKEPRSKSQKTGQNRTR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgactttcttcgacgcgagccccgcgctcgcccgtgcgctcgaagagcgcaactacaca
gcggccacgcccgttcaggccgcggtcctggcgcaggcgcgcagcggcgacatgctcgtg
tcggcgcagaccggctcgggcaagacggtcgcctatggattggccatcgcccccacgatt
ctcggcgacaccgggcagatcgccgacgcgcgcgcgcccatcgcgctcattgtcgcgccg
acgcgcgagctcgcgcttcaggtcgagcgcgagttgagctggctctacaaatatgcggga
gcgcgcatcgtcgcttgcgtcggcggcatggatgcgcgcctcgaaagacgcaagctgtcg
gagggcgcccatatcgtcgtcgggacgccgggacgtctgcgcgatcacatcgagcgcggc
ggattgaatgcgtcgatgctcaaggcggtcgtactcgacgaagccgatgaaatgctcgac
ctcggatttcgcgaggacctcgagttcatcctggaagcgtcgcctgtcgagcgacgcacc
ttgatgttctcggccaccatgccgaaaggcatcgccgcgctcgcccggcgctatcagcgc
gacgcgcagcggatcgacgtcgccggcggttcgcgcggccactccgacatcgaatacagg
gcgatccgcgtggcgccgcacgagacggagctggtgaccgtcaatctcttgcgctacttt
gaggcgccgaccgcgatcgtcttttgcaacacgcgcgagtcggtcaggcatttacacgca
accttgctcgagcgcgggttttcagcggcgcttttgtcgggcgaactcagccagcacgag
cgaaaccactcgatgcaggcgctacgcgacgggcgggcgcgcgtctgtgtcgccacggat
gtggcggcgcgcggcatcgacctgccgaatctggatttggtgatccacgcagaccttccg
cacgacgtcgaagccctgcaacatcgcagcgggcgcaccggccgcgccggccgcaagggc
gtcagcgcgcttctcatccccgcctcgcggcgccgacgcgccgagcggctactggccgac
gcgggcgtgggagcgcattggagcgggccgccaaccgcccagcaaatcctggatttggac
caggaccggatgctgaaggatccgcttctgacggaaactccaacggaagacgactttcac
atggcggaattgcttctcgccgaacgtacgccggagcagatcggcgcggcgctggtccga
ctctaccgctcccgtcttccgtcgatcgaggaggtcgtggatcccggggaggaacctgcc
cgccgcgatacgcgcagcaagccgcgtctctccgccactcaaatgtgtgaagaggcgcgc
aaacgcccgccttcggtcagcctgtccgaacccggcgtgtggttccgcctcgatatcggc
cgcaagaagaacgccgatccgaaatggctgttgccgatgctctgccggaaaggcgacgtt
gcaaggcaggatattggcgtcattcgtattttcgaccatgaaacgaaagtcgaaatctcg
tcgcgcgcggcggcgcaattcgccgcgaacatgcgccgtcctggcggcgacaatattcgc
gtcgagagattgagtggttcgtctgagggcaagtcgcgcaatgacgcgacgcccaaaagg
caaaaagaaccaagaagcaaaagtcaaaaaactggtcagaaccgaacgcggtga
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