Methylocystis iwaonis: SS37A_26390
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Entry
SS37A_26390 CDS
T09113
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS37A_26390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miwa03019
]
SS37A_26390
Enzymes [BR:
miwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SS37A_26390
Messenger RNA biogenesis [BR:
miwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SS37A_26390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDV35110
LinkDB
All DBs
Position
complement(2750472..2751827)
Genome browser
AA seq
451 aa
AA seq
DB search
MTQFADLGLSEILLRALNREGYETPTSIQAQSIPYLLQGRDLLGIAQTGTGKTAAFALPI
LERFAADRRRPTPFTARALVLAPTRELAAQIADSFRAYGQFMRPSVGVIVGGVSHRPQIE
MLSRGLDVLVATPGRLLDHIASGRFKPATTEVLVLDEADHMLDLGFVVPIRQIVAKLSKN
RQTLLFSATMPKEIAGLAQDMLNNPAQVSVTPVATTAERVDQHVFLVDGGAKRDVLLELM
KDTDVSRAIVFTRTKRGADRVAQHLEAAGVGAEAIHGNKSQNQRIRALDSFRKGRTRVLV
ATDIAARGIDVDGVTHVVNFELPEVPEAYVHRIGRTARGGASGRAISLCDNGERPLLRQI
EKLTRQSLPFTDRRSEDQRRDDAQPRRAQPSNGAGRNASHKHPRREGQHAEARRPGGERQ
NAQRPARPANGQKRRAHGGGGNRPQSRAPQA
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
gtgacccaatttgccgatctcggtctttccgagattcttcttcgcgccttgaaccgcgaa
ggctatgagaccccgacgtccatccaggcccagtccattccctatctgctccagggccgc
gaccttctcggaattgcccagaccggcaccggcaagacggcggccttcgctttaccgatc
ctggagcgcttcgccgccgaccggcgccgtcctaccccctttacggcgcgcgcgctggtg
cttgcgccgacgcgcgagctcgcggcccagatcgccgatagcttccgcgcctatgggcaa
ttcatgcggccgagcgtcggcgtgatcgtcggcggcgtatcgcatcgtccgcagatcgag
atgctgtcgcgcggcctcgacgtgctcgtcgcgacgcccggccggcttctcgaccatatt
gcgtcggggcgcttcaagccggcgacgacagaggtgctcgtcctcgacgaggccgaccat
atgctcgatctcggcttcgtcgtcccgatccgccagatcgtggcgaagctctccaagaac
cgccagaccttgctcttctccgccaccatgccgaaggagatcgccggcctcgcgcaggac
atgctgaataaccccgcgcaagtgtcggtgacgccggtcgccaccaccgccgagcgcgtc
gaccagcatgtgtttctcgtcgacggcggcgctaaacgcgatgtgctgctcgagctgatg
aaggatacggacgtctctcgcgccatcgtcttcacgcgcaccaagcgcggcgccgatcgc
gtggcgcagcacctcgaggcggcgggcgtcggcgccgaggcgatccacggcaacaagagc
cagaaccagcgcatccgtgccctcgactcgtttcgcaaaggacgcacccgcgttctggtc
gcgacggatattgcggcgcgcggcatcgacgtcgatggcgtgacgcatgtcgtcaatttc
gagctgccggaagtgccggaagcttacgtccaccgcatcggccgcacggcgcgcggcggc
gcttctggccgggcgatttccttgtgcgacaacggcgagcgtccgttgctgcggcagatc
gagaagctgacgcgccagtcgctgcctttcaccgaccgccgcagcgaggaccagcgccgc
gacgacgcccaaccgcgccgcgcccaaccgagcaatggcgccgggcgaaatgcgtcgcat
aagcatccgcgccgcgaaggccagcacgccgaagcgcgccggccgggcggcgaacgccag
aacgcgcagcgtccggcgcggccagccaatggccagaagcggcgggcgcatggcggcggc
ggcaatcgcccgcaatcgcgcgcgccgcaggcctga
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