Microbacterium sp. XT11: AB663_001981
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Entry
AB663_001981 CDS
T04243
Name
(GenBank) hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mix
Microbacterium sp. XT11
Pathway
mix03420
Nucleotide excision repair
mix03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB663_001981
03430 Mismatch repair
AB663_001981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mix03400
]
AB663_001981
Enzymes [BR:
mix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB663_001981
DNA repair and recombination proteins [BR:
mix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB663_001981
MMR (mismatch excision repair)
Other MMR factors
AB663_001981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ALX66666
LinkDB
All DBs
Position
2070998..2074555
Genome browser
AA seq
1185 aa
AA seq
DB search
MSRPASAGLDAVGSSIESSAPRRERHGERQGPLELTALDVAAALGQPAPTPAQQRVIEAP
PEPALVVAGAGSGKTETMSGRVVWLVANGHVRRDEILGLTFTRKAAGELAERIGARLAVI
DEFGRRGLLPHLPQIIADGALRRIDEAAPGRQRELVRAHVLDELAHRWGTGWDPATPRAA
EDLMIRPRVSTYNAFADGIVREHAARIGRDSDVAMLSQAASWMLAREVVLRSDLPALEDI
DYALGTVIDAVQRLAGEALDHRVDLDRAIRIARDHARAFEPYRGNADVDKAVTNLMSLPT
LVRLVEDYIDEKNRRGVLDFADQVAGAFDIVESAPDVRDELREQHRVVLLDEYQDTSVIQ
TRFLAALFRDSAVMAVGDPHQSIYGWRGASADNLYAFSSSFATTATARTYSLMTSWRNDR
TILDVANRVLQPLQRPGLDVPPLEPRPGAGSGSVDVRFPFTVDDEADAVAEWFARRRAAH
DAGASGRPHTGAILFRSKKHMQTFAAALAARGIPHRILGLGGLLATPEVVDVVSTLRVVH
DPTAGSALIRLLTGPRFRVGVADMAALYDLGRTLAERDTSLVPLPDELRARLRSSRGADE
AVSIVDAVDVVRAVRDDYRLLEGISAEGRARIRAAGEMLERLRRASSQPIPELLRLIELE
LRLDIELAANETRGPARVAATQLRAFSDEVRAFLSADERGTIGSLLAWLDKAESTDELMP
RPEPPEPGVVQLLTIHGSKGLEWDAVAVVRLVADELPSRVTDTSGWFGFGVVPFELRGDR
DALPRFEWDPDEAMGDETDPKKRQALAQASLSGGISKAQPRGGALRRFKDAYRDYQQQEE
RRLAYVAVTRARTDLLLTGSHWAGQKSPRVPSPYLVEAMEVLGIDAVAPVDPDDNPYDAP
GATLTWPLDPLGARRRAVEEAASAVREASRHHPQATPELARLLEERAMRLRGTDAGPPTR
VPASRFKDYVTDFEGTLSSIVRPMPERPYRQTRLGTLFHAWVERRSELVGVGARVDEALW
ELDEDDPSAGGDVSEADADDLGRLQEIFERSEWGGLKPIAVEIEIDFALGTGEAGDAAAG
AGGREADGHIVICKLDAVYRREDRGGRIEIVDWKTGKAPRTPQEREERMLQLALYRLAYH
RRFGVPLEEIDVALYYVADDLVIRGDRVYSEAELFQRWSAARAAR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaccggcatcggcaggactcgacgccgtgggttcgtcgatcgagtcgagcgcc
cctcggcgagagcggcacggagaacggcaggggccgctcgagctgaccgccctcgacgtg
gccgcggccctcgggcagcccgctcccaccccggcgcagcagcgcgtgatcgaagcgccg
ccggaacccgccctcgtcgtcgccggcgccggaagcgggaagaccgagacgatgtcgggg
cgcgtggtctggctcgtggccaacggacacgtgcggcgcgacgagatcctcggactgacc
ttcacgcgcaaggcggcaggagagctcgccgagcggatcggcgcgcggctggcggtgatc
gacgagttcggcagacggggtctcctcccgcatctgccgcagatcatcgccgacggggcg
ctgcggcgcatcgacgaggcggcgcccggacgacagcgcgagctcgtgcgggcgcatgtg
ctcgacgaactcgcgcatcgatggggaaccggctgggatccggcgacgccgcgcgcggcc
gaggacctcatgatccgtccgcgggtgtcgacctacaacgcgttcgccgacggcatcgtg
cgggagcatgcggcgaggatcggccgcgattccgatgtcgcgatgctgagccaggccgcg
tcgtggatgctcgcgcgcgaggtggtcctgcgcagcgaccttcccgcgctcgaggacatc
gactacgcgctgggcaccgtcatcgacgcggtgcagcgtctggcgggggaggccctcgat
catcgcgtcgacctcgacagggcgatccgcatcgcccgggatcatgcgcgggcgttcgag
ccgtaccgcggcaacgccgacgtggacaaggccgtgacgaacctgatgagcctgcccacc
ctggtgcggctcgtcgaggactacatcgacgagaagaaccgtcggggcgtgctcgacttc
gccgatcaggtcgcgggggcgttcgacatcgtggagtccgctcccgacgtgcgtgatgag
ctgcgggagcagcatcgcgtggtgctgctcgacgagtaccaggacacctcggtcatccag
acgcgcttcctcgccgcgctcttccgcgatagtgccgtcatggccgtgggcgatccccac
cagtcgatctacggatggcgcggcgccagcgccgacaacctctacgcgttctcgagctcc
ttcgccaccacggctacggctcgcacctacagcctcatgacgagctggcgcaacgaccgc
accatcctcgacgtcgccaaccgcgtgctgcagccgctgcagcggcctgggctcgacgtg
ccgccgctcgagcccagaccgggggccggaagcggatcggtcgatgtgcgcttcccgttc
accgtcgacgatgaagccgacgcggtcgcggagtggttcgcgcgtcgcagggccgcccac
gatgccggggcgagcggtcgtccgcacaccggtgcgatcctcttccggtcgaagaagcac
atgcagaccttcgctgcggcgctcgcggcgcgcggcatcccgcaccgcatcctcggtctc
ggcggcctgctcgccacgccggaggtggtggacgtggtctcgacgcttcgggtggtgcac
gacccgaccgccggatcggcgctcatccggctgctcaccggaccgcgtttccgcgtgggc
gtcgccgacatggccgccctctacgatctgggccgcacactcgccgagcgcgacacgtcg
ctggttcccctgcccgacgagctgcgtgcgcgtctgcgctcgtcacgcggcgcggacgag
gcggtgtctatcgtcgatgccgtcgatgtggtccgtgcggtgcgcgacgactaccgcctg
ctcgagggcatcagcgccgagggtcgcgcgcgcatcagggctgcgggagagatgctcgag
cggctgcggcgagcctcgtcccagccgattcccgagctcctgcggctcatcgaactcgaa
ctgcgtctcgacatcgaattggcggcgaacgagacgaggggccccgcgcgcgtcgccgcg
acccagctgcgggcgttctccgacgaggtgcgcgcgttcctcagcgctgacgagcggggg
accatcggcagcctcctcgcctggctcgacaaggcggagagcaccgacgagctgatgccg
cgtcccgagcctccggagccgggggtggtgcagctgctgaccatccacggatccaaggga
ctcgagtgggacgccgtcgccgtcgttcggctcgtcgccgatgaactgcccagccgcgtg
acggacacctccgggtggttcggcttcggcgtcgtccccttcgagctgcgcggcgaccgc
gacgccctgcctcgattcgagtgggatcccgacgaggcgatgggcgacgagaccgacccg
aagaagcgccaggcgctcgcgcaggcctcgctgtccggcggcatctcgaaggctcaaccg
cgaggcggagccctcagacgcttcaaagacgcgtaccgcgactaccagcagcaggaggag
cgtcgtctggcctatgtcgccgtcacccgcgcgcgcaccgacctgctgctcacggggtcg
cattgggcaggccagaagtcaccgagggttcccagtccctatctcgtggaggcgatggag
gtcctcgggatcgacgcggtcgcccctgtcgatcccgacgacaacccgtacgacgccccc
ggggcgacgttgacgtggccgctcgacccgctcggtgcgcgccgccgtgcggtcgaagag
gccgcctctgcggtgcgggaggcatcgcgtcatcaccctcaggccactccggagctcgcg
cggctgctcgaggaacgggcgatgcgtctccgcggcacggacgccggaccgcccacgcgc
gtgccggcatcgcggttcaaggactacgtgacggacttcgagggcaccctgtcgtccatc
gtccggcccatgcctgagcgtccctaccggcagacgcgtctcggcacgctgttccatgcc
tgggtcgagcgtcgcagcgagctcgtcggtgtgggcgcgcgcgtcgacgaggcgctgtgg
gagctggacgaagacgacccgtcggccgggggagacgtctccgaggcggacgccgacgac
ctcggccggttgcaggagatcttcgagcgcagcgagtggggaggcttgaaaccgatcgcg
gtcgagatcgagatcgacttcgcgctcggcacgggcgaggctggtgatgctgccgcgggc
gctggcggacgtgaggccgacggccacatcgtcatctgcaagctcgacgccgtgtaccgg
cgagaagatcgcggcggacgcatcgagatcgtcgactggaagacggggaaggccccgcgc
acgccacaagagcgcgaggagcggatgctccagctcgcgctgtatcgcctcgcctaccac
cgtcggttcggggtgccgctcgaggagatcgacgtcgcgctgtactacgtggccgacgat
ctcgtgatccgcggcgaccgggtctactccgaggccgagctcttccagcgctggagcgcc
gcgcgcgcggcccgctga
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