Microbacterium sp. XT11: AB663_003271
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Entry
AB663_003271 CDS
T04243
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mix
Microbacterium sp. XT11
Brite
KEGG Orthology (KO) [BR:
mix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mix03019
]
AB663_003271
Enzymes [BR:
mix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB663_003271
Messenger RNA biogenesis [BR:
mix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB663_003271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
ResIII
SLFN-g3_helicase
NACHT
AAA_30
UvrD-helicase
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
ALX67358
LinkDB
All DBs
Position
3339308..3343177
Genome browser
AA seq
1289 aa
AA seq
DB search
MSSPAISYPPELPVSAAREEIADAIRDHQVVIVAGATGSGKTTQLPKICLELGRTRIAHT
QPRRLAARTIAERVAEELRVELGGLVGYKVRFTDQVSDATRIALMTDGILLNEIHRDRLL
RRYDTIIIDEAHERSLNVDFLLGYLRRILPERPDLKVIITSATIDPESFARHFADAAGEP
APIIEVSGRTFPVEIRYRPRTDESEEEDEVAEIVAALRELDREAPGDVLVFLPGEAEIRD
AADAVRSAYRSQTAPVEVLPLYGRLSAAEQHRVFERSTVAGLRRRVVLATNVAETSLTVP
GIKYVIDTGTARISRYSTRSKVQRLPIEPVSQASANQRSGRAGRTSDGIAIRLYGEDDFE
KRPEFTEPEILRTSLASVVLQMLSLGFGDITEFPFLTPPDSRGVKAAFDLLTELGAVSDG
RLTRVGRELARMPMDPRLARMLVEARRTGVVPQVLPIVAGLSIQDVRERPSADAPQAVRD
EADRLHARFADPTSDFLALLNLWNHLRRQQRELGSSAFRRMCRTEHLNYVRVREWFDVHR
QLRTLVREGGEPASDSAAADPDAIHRAILAGLLSQIGILDERTAAKGQNKTASKEQKRRM
AEYRGARGIRFSIFPGSGLRKKSPNAVMAAEIVETSRTFARTVAAIDPAWAEALAGDLAK
RQISEPHWSKDAGAAIAYEKVTLFGVEIVARRRVQFARVDRAASRELFVRHALVEGEWDP
SRLDKRVSAFWRSNAELRRRLEKLEDRERRRDILAGDEEVFRFYDERIPAEVFDVRSFEK
WWREALATTPKLLTMRESDLVDDDSRADQSEFPTRWTQGDQVLGLAYRFEPGAPDDGVSV
VVPLALLAQLDDTGFDWQVPGLRDELITALLRSLPKAIRRHVVPAADWAERFSAELAGAG
PESHGGRPDRTLAQALARLIQPLANQPVSASDFDLARVPAHLRMNFRAVDERGRVVGSSR
DLPDLQSRLSDRARSSVARSVSASRSEAPSRVAAASAQGTVERTGLTAWTFGDLPEVLDT
RVAGGVVRGYPAIVDEGKSVAVRVEATADAAAAATRDGVLRLVLLTVPSPSSYVQEHLTA
QEKLALAASPYQNAAALIEDCRAAVARSVIERTLPGGVVRTEAEFTRVRDAVSSSLVDEL
FACVSLVARILTAAREVERGIKSQNSLALLGPLGDIRGQLSGLLHPGFVSAAGVDRLAHF
PRYLAGMLERLKTLANEPGKDRSRMSEYERAAAAFEEAGGVIPLPRDAARNLVETRWLLE
EYRVSVFAQRLGTAQPVSPQRIAKALAAS
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccccgcgatctcctatcctcccgagctgcccgtcagcgccgcacgggaggag
atcgccgatgcgatccgcgaccatcaggtcgtcatcgtcgccggcgccaccggttcgggc
aagaccacgcagctgccgaagatctgcctcgagctcggccgcacgcgcatcgcgcacaca
cagccgcgcaggctcgccgcccgcacgatcgccgagcgcgtcgccgaggaactccgggtc
gagctcggcggactcgtcggctacaaggtgcgcttcaccgaccaggtctccgatgccacg
cgcatcgcgctcatgaccgacggcatcctgctcaacgagatccaccgcgaccgcctgctg
cgccgctacgacacgatcatcatcgacgaggcccacgagcgctccctcaacgtcgacttc
ctcctcggctaccttcgccgcatcctgccggagcggcccgatctcaaggtgatcatcacc
tcggcgaccatcgacccggagagcttcgcgcgccacttcgcggatgccgcgggcgagccg
gcgccgatcatcgaggtctccggccgcacgttccccgtcgagatccgctatcgcccgcgc
accgacgagagcgaggaggaggacgaggtcgccgagatcgtcgcggccctgcgcgagctc
gaccgcgaagcacccggagacgtgctcgtgttcctccccggtgaggccgagatccgcgac
gccgcggatgccgtgaggagcgcgtaccgctcgcagaccgcgcccgtcgaggtgctgccg
ctgtacgggcgcctttccgccgccgagcagcaccgcgtgttcgaacgctccacggtcgca
gggctccggcggcgcgtggtgctcgcgaccaacgtggccgagacgagcctcacggtgccg
ggcatcaagtacgtcatcgacacgggcaccgcgcgcatctcgcgctacagcacgaggtcg
aaggtgcagcgtctccccatcgaaccggtgtcgcaggcctccgcgaatcagcggtcgggc
cgtgccggccgcacgagcgacgggatcgccatccgcctgtacggagaagacgacttcgag
aagcggcccgagttcaccgagccggagatcctgcgcacctcgctcgcctccgtcgtgctg
cagatgctgtctctcgggttcggcgacatcacggagttcccgttcctcacccctcccgac
tcgcgcggcgtgaaggcggcgttcgacctgctcaccgagctcggcgcggtgtcggacgga
cgactgacccgcgtcggtcgcgagctggcgcggatgccgatggatccgcgactggcgcgg
atgctcgtggaggcgcgacgcactggggtggtcccgcaggtgctccccatcgtggcgggg
ctctcgatccaggacgtgcgcgagcgtccctcggccgacgcgccgcaggcggtgcgggac
gaggcggatcgcctgcacgcccgcttcgcggatcccacgagcgacttcctcgccctgctg
aacctgtggaaccacctgcgccggcagcagcgtgagctcggctccagcgccttccggcgg
atgtgccgcaccgagcacctcaactacgtgcgggtgcgggagtggttcgacgtgcaccgc
cagttgcgcacgctcgtgcgcgagggcggcgagcccgcctccgacagcgccgcggccgac
cccgacgcgatccaccgggcgatcctggcaggactcctctcgcagatcggcatcctcgac
gagcggaccgccgcgaagggccagaacaagacggcgtcgaaggagcagaagcgccggatg
gcggagtaccgcggcgcccgcggcatccgcttctcgatcttccccggctccggcctgcgc
aagaagagcccgaacgcggtgatggcggccgagatcgtcgagacctcgcgcacgttcgcc
cgcacggtcgccgcgatcgatccggcctgggccgaggcgctggccggagacctcgccaag
cggcagatcagcgagccgcactggtcgaaggacgcgggcgcagcgatcgcgtacgagaag
gtcacgctgttcggcgtcgagatcgtcgcgcgccgtcgcgtgcagttcgcccgcgtcgac
agggcggcatcgcgcgagctcttcgtgcggcacgccctcgtggagggcgagtgggacccg
tcgcgtctcgacaagcgcgtcagcgcgttctggcgcagcaacgcggagctccgccgcagg
ctggagaagctcgaggatcgcgagcggcgccgcgacatcctcgccggcgacgaggaggtg
ttccgcttctacgacgagcgcatccccgccgaggtgttcgacgtgcgatccttcgagaag
tggtggcgagaggcgctcgcgacaacgccgaagctgctcacgatgcgggagtccgacctc
gtcgacgacgacagccgcgccgatcagagcgagttccccacccgctggacgcagggtgac
caggtgctcgggctcgcataccggttcgagccgggtgcgcccgacgacggggtgagcgtg
gtcgtgccgctcgcgctgctcgcccagctcgacgacaccggcttcgactggcaggtgccc
ggcctgcgcgacgagctgatcaccgcgctgctgcgctcgctccccaaggcgatccggcga
catgtcgtccctgcggcggactgggcggagaggttcagcgccgagctcgccggagcgggc
ccggagtcgcacggcggacgccctgaccgcacgctcgcgcaggcgctcgcccgactcatc
cagccgctggcgaaccagcccgtctcggcatccgacttcgacctcgcacgggtcccggcc
cacctgcgcatgaacttccgcgccgtcgacgaacgcgggcgcgtcgtcgggtcgagtcga
gatctccccgacctgcagtcgaggctgtccgaccgcgcgcgcagcagcgtcgcgcgatcg
gtgagcgcgtcacgttccgaggcgccgagtcgcgtcgccgcggcatccgcccagggcacc
gtcgagcgcacggggctcaccgcctggacgttcggcgacctgcccgaggtgctcgacacc
cgcgtcgccggcggtgtcgtgcgcggctaccccgccatcgtggacgaggggaagagcgtg
gcggttcgggtggaggcgacggcggatgccgctgccgctgccacccgcgacggcgtgctg
cgtctcgtgctgctgaccgtgccgtcgccgtcgtcgtacgtgcaggagcacctgaccgcg
caggagaagctcgcgctggcggcgtcgccgtaccagaacgcggccgcgctcatcgaggac
tgccgagccgcggtggcgcgcagcgtgatcgagcggacgctgccgggcggggtcgtgcgc
acggaggcggagttcacgcgggtccgcgacgcggtgtcgtcgtcgctcgtcgacgagctg
ttcgcgtgcgtctcgctcgtcgcccgcatcctcaccgcggcgcgcgaggtcgaacgcggc
atcaagtcgcagaactcgctcgccctgctcggcccgctcggcgacatccgcggacagctg
agcggactcctgcatccggggttcgtgtcggcggcgggcgtcgaccgcctcgcgcacttc
ccccgttacctcgccggcatgctcgagcgcctgaagaccctcgcgaacgagccgggcaag
gaccgttcgcgcatgagcgaatacgaacgcgcggcggcggcgttcgaggaggccggcgga
gtgatcccccttccccgtgacgccgcgcggaatctcgtggagacgaggtggctgctggag
gagtaccgcgtcagcgtcttcgcccagcggctcggcacggcacagccggtgtcgccgcag
cgcatcgccaaggcgctcgccgcgagctga
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