Candidatus Micrarchaeum sp. A_DKE: Micr_00042
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Entry
Micr_00042 CDS
T07038
Symbol
endA_2
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
miy
Candidatus Micrarchaeum sp. A_DKE
Brite
KEGG Orthology (KO) [BR:
miy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
miy03016
]
Micr_00042 (endA_2)
Enzymes [BR:
miy01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Micr_00042 (endA_2)
Transfer RNA biogenesis [BR:
miy03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Micr_00042 (endA_2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_end_N2
tRNA_int_endo_N
Sen15
Motif
Other DBs
NCBI-ProteinID:
QRF73531
LinkDB
All DBs
Position
complement(40416..41588)
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AA seq
390 aa
AA seq
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MALEIVYDKHKKAIYCKDQSTIDTLRSGNIGTMSNGTLKLAPEEALYVLDVRKAVCKSSD
SGDEITFNGLASYFSKNKKFMARYFTYKDWRDRGLMIRSPKEEHVATKNAQMQIKRYPSS
SINISKYSMNGVFFEDDLTSVVDDPEMGKQIYEQYWFGQYGTYKLSNHGTLNKFDLYETL
FLVEFGSLKIEGYPFNEILKIASKVRPDAQKLYEVYKDWRSKGYVIKSGFKFGTHFRVYF
PGAKPIKDDPSWIHSKHVLHVFPRDSKLLTSEWARVIRVAHSVKKTFILGIPGKTRQKKV
NMDFILYHRKHDGIEIPGKDAPHFGMLSLGENEYIGGSELSAMINEANSEHMELIIAIAD
RETAVTYYRVKKIELPTSEYEYYEIDWMQP
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
ttggcattggaaatagtttacgacaagcacaaaaaggcaatatactgcaaggaccagtct
acaatagatacgctaaggtctgggaacataggcaccatgtccaacggaacgctaaagcta
gccccagaagaggctctttatgtattggacgtcaggaaggcagtatgcaaatcgtcagat
tctggtgacgagataacttttaacggtcttgcatcatatttttcaaaaaacaagaagttc
atggccaggtacttcacgtacaaagattggcgtgaccgaggtttaatgatcagaagccct
aaggaagagcatgttgccacgaagaacgcacaaatgcagattaagagatatccttcttct
tcgataaacatatcaaaatactcaatgaacggcgtattctttgaggacgatcttacttcg
gttgtagacgatcccgagatgggaaagcagatatacgaacagtattggttcggccagtat
ggaacatacaagctaagcaatcatggaaccctgaacaagttcgacctctacgaaacccta
tttctggtcgaattcggatctctaaagatagaaggatatccgttcaatgaaatactgaag
atagcttccaaagtcaggccggatgcccaaaagctctacgaagtctacaaggattggaga
tccaaaggctatgtaataaaatccggattcaagttcggcacgcatttcagggtctatttt
cccggtgcaaagcccataaaggacgatccttcatggatccattcaaagcacgtgctgcat
gtatttccaagggattcgaaacttttgacatcggaatgggcaagggtcataagggtagcg
cattctgtgaagaaaaccttcatactcggaatacctggaaaaacaaggcagaaaaaggtg
aacatggactttatactctaccacagaaagcacgacggaatagagattcctgggaaagac
gcaccgcacttcggcatgctttcgcttggagagaacgaatatataggcggaagcgagctt
tcagccatgataaatgaggccaacagcgaacacatggagctgataatagcgatagccgac
agggaaactgctgttacctattaccgcgtgaaaaaaatagagctgcccaccagtgaatac
gaatattacgagatagactggatgcagccatag
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