Methanocaldococcus jannaschii: MJ_0682
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Entry
MJ_0682 CDS
T00003
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mja
Methanocaldococcus jannaschii
Brite
KEGG Orthology (KO) [BR:
mja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mja03016
]
MJ_0682
Enzymes [BR:
mja01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MJ_0682
Transfer RNA biogenesis [BR:
mja03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MJ_0682
Prokaryotic type
tRNA splicing ligases
MJ_0682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
LAGLIDADG_3
Intein_splicing
Motif
Other DBs
NCBI-ProteinID:
AAB98677
UniProt:
Q58095
LinkDB
All DBs
Position
complement(607983..610889)
Genome browser
AA seq
968 aa
AA seq
DB search
MKDVLKRVSDVVWELPKDYKDCMRVPGRIYLNEILLDELEPEVLEQIANVACLPGIYKYS
IAMPDVHYGYGFAIGGVAAFDQREGVISPGGVGFDINCLTSNSKILTDDGYYIKLEKLKE
KLDLHIKIYNTEEGEKSSNILFVSERYADEKIIRIKTESGRVLEGSKDHPVLTLNGYVPM
GMLKEGDDVIVYPYEGVEYEEPSDEIILDEDDFAEYDKQIIKYLKDRGLLPLRMDNKNIG
IIARLLGFAFGDGSIVKENGDRERLYVAFYGKRETLIKIREDLEKLGIKASRIYSRKREV
EIRNAYGDEYTSLCEDNSIKITSKAFALFMHKLGMPIGKKTEQIYKIPEWIKKAPKWVKR
NFLAGLFGADGSRAVFKNYTPLPINLTMSKSEELKENILEFLNEIKLLLAEFDIESMIYE
IKSLDGRVSYRLAIVGEESIKNFLGRINYEYSGEKKVIGLLAYEYLRRKDIAKEIRKKCI
KRAKELYKKGVTVSEMLKMDEFRNEFISKRLIERAVYENLDEDDVRISTKFPKFEEFIEK
YGVIGGFVIDKIKEIEEISYDSKLYDVGIVSKEHNFIANSIVVHNCGVRLIRTNLTKEEV
QSKIKELIKTLFKNVPSGLGSKGILKFSKSVMDDVLEEGVRWAVKEGYGWKEDLEFIEEH
GCLKDADASYVSDKAKERGRVQLGSLGSGNHFLEVQYVEKVFDEEAAEIYGIEENQVVVL
VHTGSRGLGHQICTDYLRIMEKAAKNYGIKLPDRQLACAPFESEEGQSYFKAMCCGANYA
WANRQMITHWVRESFEEVFKIHAEDLEMNIVYDVAHNIAKKEEHIIDGRKVKVIVHRKGA
TRAFPPKHEAIPKEYWSVGQPVIIPGDMGTASYLMRGTEIAMKETFGSTAHGAGRKLSRA
KALKLWKGKEIQRRLAEMGIVAMSDSKAVMAEEAPEAYKSVDLVADTCHKAGISLKVARM
RPLGVIKG
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatgtattaaaaagggtctccgatgtagtatgggaattacctaaggattacaaa
gattgcatgagagttcctggaagaatctacttaaacgaaatcctattagatgagttagaa
ccagaggttttagaacaaatagcgaacgttgcatgcttgcctgggatttataagtattct
atagctatgcctgatgtgcattacggttatgggttcgcgattggcggggtagcggctttt
gaccaaagagaaggagttataagccctggaggggttggttttgatatcaactgccttaca
tcaaactcaaaaatattaacggatgatggatattacataaaattggaaaaactaaaagaa
aaattggatttacatattaagatttataatacagaggagggagaaaagagttcaaacata
ttgtttgtctctgaaagatatgcagatgagaagataataaggataaaaacagaatctgga
agagttttagagggaagtaaagaccatccagttttaacattaaacggttatgtaccaatg
ggcatgttaaaagaaggggatgatgtaatagtttatccttatgaaggggttgaatatgaa
gaaccgtctgatgagataatattagatgaggatgattttgcagagtatgataaacagatt
atcaaatatctaaaagatagagggttattaccacttagaatggacaacaaaaatattggt
attattgcaagattgttaggttttgcatttggagatggaagtatagttaaagagaatggg
gatagagagaggttgtatgtggcattttatggaaagagagagacgcttattaaaattaga
gaagatttagagaaattaggaataaaagcttcaagaatatattcaaggaagagggaagtt
gagataagaaatgcctacggagatgaatatacaagcttgtgtgaagacaactctataaaa
ataacttcaaaggcatttgcattgttcatgcataaattgggaatgccaattggtaaaaag
acagagcagatatacaaaatcccagagtggataaagaaagctccaaaatgggtaaagaga
aacttcttagctggattgtttggagctgatggaagtagggcagtgtttaaaaactacaca
ccattaccaataaacttaacgatgtcaaagagtgaagagctaaaagaaaatatcttagag
tttttaaatgaaattaagctattattggctgagtttgacattgaaagtatgatttatgag
ataaaatctttagatggtagagtttcatacagactggcaattgttggggaagagagcata
aagaacttcttaggaagaataaactatgaatattcaggggagaaaaaagttattggattg
ttggcttatgaatacttaagaaggaaggatattgcaaaagaaattagaaaaaaatgtatt
aaaagagcaaaagaactttataaaaaaggagtaacagtctcagaaatgttaaagatggat
gaatttagaaatgagtttataagcaaaagattaattgagagggcagtatatgaaaacttg
gatgaagatgatgtaagaatttcaacaaaattcccaaagtttgaggaatttattgaaaaa
tatggggttattggaggatttgtaatagacaagataaaggagattgaagaaatttcttat
gattcaaaattgtatgatgttggaatagtaagcaaagaacacaacttcatagcaaatagc
atagttgtccataactgtggagttaggcttataagaacaaatttaacaaaagaagaagtt
caatcaaagataaaagagcttataaaaaccttattcaaaaatgtcccttctggtttggga
agtaagggaattttaaaattcagcaaaagtgttatggatgatgtattagaggaaggagtt
agatgggctgttaaagagggttatggatggaaggaagatttagagtttattgaagaacat
ggctgtttaaaagatgcagatgcttcctatgtctcagataaagcaaaagagagaggaaga
gttcaattaggaagtttaggaagtggaaaccacttcttagaagtgcagtatgttgaaaag
gtatttgatgaggaagctgctgaaatatatggaatagaggaaaatcaagttgttgtttta
gtgcacaccggttcaagaggtttagggcatcaaatctgtactgattatttaagaattatg
gaaaaagcagccaaaaactatggaataaaacttccagatagacagttggcatgtgctcca
tttgaatcagaagaagggcagagttactttaaagcaatgtgctgtggagcaaactatgca
tgggcaaatagacagatgattactcactgggttagagagagctttgaagaagtatttaaa
atacatgctgaggatttagagatgaatattgtctatgatgtagcccacaacatagctaag
aaagaagaacacataatagatggaaggaaggtaaaagttatagtgcatagaaaaggagct
acaagggcattcccaccaaagcatgaggcaattccaaaagaatattggagtgttggacag
ccggttattattcctggagatatgggaaccgcctcttacttaatgagagggacagagatt
gctatgaaagagacgtttggttcaacggcacatggagccggtagaaagctaagtagggct
aaggcattaaagttgtggaagggtaaagagatacaaagaagattggcagagatgggaatc
gttgccatgagtgattcaaaggcagttatggcagaggaagcaccagaggcatataagagt
gttgatttagtcgcagatacatgtcataaagctggaatatcattaaaagtagcaagaatg
agaccattaggagttattaaaggataa
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