Mycolicibacter sinensis: JDM601_1220
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Entry
JDM601_1220 CDS
T01512
Symbol
deaD
Name
(GenBank) cold-shock DEAD-box protein DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mjd
Mycolicibacter sinensis
Pathway
mjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDM601_1220 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjd03019
]
JDM601_1220 (deaD)
03009 Ribosome biogenesis [BR:
mjd03009
]
JDM601_1220 (deaD)
Enzymes [BR:
mjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JDM601_1220 (deaD)
Messenger RNA biogenesis [BR:
mjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JDM601_1220 (deaD)
Ribosome biogenesis [BR:
mjd03009
]
Prokaryotic type
rRNA helicases
JDM601_1220 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Motif
Other DBs
NCBI-ProteinID:
AEF35220
UniProt:
F5YVX3
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All DBs
Position
1300556..1302199
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AA seq
547 aa
AA seq
DB search
MLQAVVDVGYETPSAIQAATIPALLAGSDVVGLAQTGTGKTAAFAIPILSRIDTASKATQ
ALVLAPTRELALQVAEAFGRYGSHLPRVNVLPIYGGASYTVQLSGLKRGAQVVVGTPGRV
IDHLERGSLDLSHLDYLVLDEADEMLQMGFAEDVERILADTPEYKQVALFSATMPPAIRR
ITTRYLHDPVEVTVEAKTTTAENISQRYIEVAGPRKMDALTRVLEVETFEAMIVFVRTKQ
ATEEVAEKLRARGFAAAAINGDIAQAQRERTIASLKSGNIDILVATDVAARGLDVERISH
VVNYDIPHDTEAYVHRIGRTGRAGRSGTALLFVSPRERHLLKAIERATRQKLTESTLPTV
EDVNAQRVAKFADSITTTLGADGTDLFRSLVEEYSREHNVPMADIAAALALQSRDGEAFL
MAPEPPARERRSRDKSERPDRKSDRKGPPKEGFATYRIAVGKRHKVNPGAIVGALANEGG
LNRSDFGHISIRVDHSLVELPAKLSGKTLKALEQTRIQGQLINLRRDRPSGKPARHGDGG
THRKRMG
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaggccgtcgtcgacgtcggctacgagacgccatcggcgattcaggccgccacc
atcccggcactgttggcgggctccgacgtggtcgggctggcgcagaccggcaccggtaag
accgcggcgttcgccatcccgatcctgtcgcgcatcgacaccgccagcaaggccacccag
gcgctggtgctggcgcccacccgcgagctggcgctgcaggtcgccgaggcgttcgggcgc
tacggctcgcacctgccgcgcgtcaacgtgctgccgatctacggcggcgcgtcctacacc
gtgcagctgtcgggtctcaaacgcggcgcccaggtggtggtcggcaccccgggccgggtc
atcgaccacctggagcggggcagcctggacctgtcgcacctcgattatctggtgctcgac
gaggccgacgagatgctgcagatgggtttcgccgaggacgtcgagcgcatcctggccgac
accccggagtacaagcaggtggcgttgttctccgcgacgatgccgccggcgatccgccgg
atcaccacgcgctatctgcatgatccggtcgaggtcaccgtcgaggcgaaaaccaccacg
gcggagaacatctcgcagcgctacatcgaggtcgccggtccacgcaagatggacgcgctg
acgcgggtgctcgaggtggagacgttcgaggcgatgatcgtgttcgtccgcaccaagcag
gccaccgaggaggtcgccgaaaagctgcgcgcccgagggtttgccgccgcggcgatcaac
ggagacatcgctcaggcgcagcgcgagcggaccatcgcgtcgctcaagagcggcaatatc
gacatcctggtggccaccgatgtcgccgcccgcggcctggacgtcgaacgcatctcgcac
gtggtcaactacgacatcccgcacgacaccgaggcctacgtgcaccgcatcggccgcacc
gggcgggccggtcgatcggggaccgcgctgctgttcgtcagcccgcgggaacgccacctg
ctcaaggcgatcgagcgggcgacccgccagaagctcaccgagtcgacactgcccaccgtc
gaggacgtcaacgcccagcgagtggcgaagttcgccgactcgatcaccaccaccctcggt
gcggacggcaccgatctgttccgcagcctggtcgaggagtacagccgggaacacaacgtg
ccgatggccgacatcgccgccgcgttggcgttgcagtcccgcgacggggaggcgttcctg
atggcgccggaaccgcccgcgcgagaacgccggtcacgcgacaaatccgagcggcccgac
cgcaagagcgaccgcaagggtccgcccaaggagggatttgccacctaccggatcgcggtg
ggcaagcgccacaaggtcaacccgggcgcgatcgtgggggcgctggccaacgagggcggg
ctgaaccgcagcgacttcggccacatcagcatccgggtggaccactcgctggtggaactg
cccgccaagctgtcgggcaagacgctcaaggcgctggagcagacccgcatccagggccag
ttgatcaatctgcgccgggaccggccgtccggcaagcccgcccgccacggcgacgggggg
acgcaccggaaacggatgggatga
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