Mycolicibacter sinensis: JDM601_1296
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Entry
JDM601_1296 CDS
T01512
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mjd
Mycolicibacter sinensis
Pathway
mjd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDM601_1296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjd03021
]
JDM601_1296
03019 Messenger RNA biogenesis [BR:
mjd03019
]
JDM601_1296
Transcription machinery [BR:
mjd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
JDM601_1296
Messenger RNA biogenesis [BR:
mjd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
JDM601_1296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Fungal_virus_P2_C
VWA_2
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEF35296
UniProt:
F5YWK9
LinkDB
All DBs
Position
1381053..1383101
Genome browser
AA seq
682 aa
AA seq
DB search
MTETDLFTAEGSTGQASLSTSQSDSPTSSQGASEASGASTPAAGDDTAVSAPEASSTPAT
SDSAPAATPDNGAATAAEPSLSAMVLPELRALANRVGVKGASGMRKSELIAAIREVGGNG
GNQGSGGNGGGGGDAAETPAAEAPANGAAVGDEPAQPEATDAGEATEAPPRRERRGASRA
TGAPAADGEDQDKGEPRKQGEASKQGDGNKQDKPDEKAEQTGGRRDGAKSDDAAGGKGDQ
AKGDQAKGDQAKGDEQNRGQQGQQNGDDDDGRGGRRGRRFRDRRRRGERGGEGGDTELRE
DDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVPRDG
EQPNQRQKFNPLVRLDSVNGGPVEDAKKRPEFSKLTPLYPNQRLRLETSTEKLTTRVIDL
IMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK
GEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI
LSGGVDSTALYPPKRFLGAARNIEDGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK
LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRLLSGLDSHQAIDLLMSQLR
KTKNNYEFLVQVSKTTPGMDND
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaacggacctcttcacggctgaaggcagcaccggacaggcttcgctgtcgacc
tcccagagcgactccccgacctcgagtcagggcgcttcggaggcctccggtgccagcacg
ccggccgccggcgacgacaccgcagtgtccgcccccgaagccagctcgacgcccgccacc
agcgactccgcgcccgccgcgacacccgacaacggtgctgcgaccgctgcggaaccgtcg
ttgtcggcgatggtgttgcccgagctgcgcgcgctggccaaccgcgtcggcgtcaaaggc
gcctccgggatgcgcaagagcgagctgatcgccgcgatccgcgaagtcggcggcaacggc
ggcaaccaaggtagcggcggcaatgggggtggcggcggcgacgctgccgagacgcccgcc
gccgaggcgcccgcgaacggggccgccgtcggcgacgagcccgcccaacccgaggccacc
gacgccggcgaggccaccgaggcgccgcctcgtcgtgaacggcgcggcgccagccgcgcg
accggcgcacctgctgccgacggggaagaccaggacaaaggcgagccccgcaagcagggt
gaggccagcaagcagggcgacggcaacaagcaggacaagcccgacgagaaggccgagcag
accggtggccgccgcgacggcgccaagtccgacgacgccgctgggggcaaaggcgatcag
gccaaaggcgatcaggccaagggcgatcaggccaagggcgacgagcagaaccgcggccag
cagggccagcagaacggcgatgacgacgatgggcgcggtggccggcgcggccgccggttc
cgggaccggcggcgccggggcgaacgcggcggcgaaggcggcgacaccgagctgcgcgag
gacgacgtcgtccagccggtggccggcatcctcgacgtgctggacaactacgcgttcgtg
cgcacctccggctacctggccggcccgaacgacgtctatgtctcgatgaacatggtccgc
aagaatgggctgcgccgcggcgacgcggtgaccggcgccgtgcgggtgccccgcgacggc
gagcagcccaaccagcggcagaagttcaacccgctggtgcggttggactccgtcaacggc
ggacccgtcgaggacgccaagaagcgccccgaattctccaagctgaccccgctgtacccc
aaccagcggctgcgtttggagacgtcgacggagaagctgaccacccgtgtcatcgacctg
atcatgccgatcggcaaggggcagcgcgcgctgatcgtgtcgccgcccaaggccggtaag
accacgatcatgcaggacatcgccaacgcgatcacccgcaacaacccggagtgccacctg
atggtggtgctggtcgacgagcggcccgaggaagtcaccgacatgcagcgctcggtcaag
ggtgaggtcatcgcctccaccttcgaccggccgccgtcggaccacacccaggccgccgaa
ctggccatcgagcgggccaagcgcctggtcgagcagggcaaggacgtcgtggtgctgctc
gactcgatcacccggctggggcgggcctacaacaacgcctccccggcgtcgggccgcatc
ctgtccggtggtgtggactccaccgcgctctacccgcccaagcggttcctgggcgccgcg
cgcaacatcgaggacggcggctcgctgaccatcatcgccaccgcgatggtcgagaccggg
tccaccggtgacacggtgatcttcgaggagttcaagggcaccggcaacgccgagctcaag
ctggaccgcaagatcgccgagcgccgggtgttcccggccgtcgacgtcaacccgtccggc
acccgcaaggacgagctgctgctctcgccggacgagttcgcgatcgtgcacaagctgcgc
cggttgctgtcgggcctggactcgcatcaggccatcgacctgctcatgagccagctgcgc
aagaccaagaacaactacgagttcctggtccaggtctccaagaccacgccgggaatggac
aacgactga
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