Mycolicibacter sinensis: JDM601_2916
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Entry
JDM601_2916 CDS
T01512
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mjd
Mycolicibacter sinensis
Pathway
mjd03420
Nucleotide excision repair
mjd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JDM601_2916
03430 Mismatch repair
JDM601_2916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjd03400
]
JDM601_2916
Enzymes [BR:
mjd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JDM601_2916
DNA repair and recombination proteins [BR:
mjd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JDM601_2916
MMR (mismatch excision repair)
Other MMR factors
JDM601_2916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
VCPO_2nd
Motif
Other DBs
NCBI-ProteinID:
AEF36916
UniProt:
F5Z128
LinkDB
All DBs
Position
complement(3119134..3122565)
Genome browser
AA seq
1143 aa
AA seq
DB search
MKARYDPAELAAALGLHQPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGY
ADPGQVLGLTFTRKAAGQLLRRVRSRLARLAGTGLLIPEPGFAGSAGGSATPTVSTYHAF
AGALLREHGLLLGIEPDTRLLTETGLWQLAFDVVSGYPGELRTDRDPAAITAMVLRLAGQ
LAEHLVDTDALRDTHLELERLVHTLPPGPRQRADPNQSLLKMLDTQTERASLVPLIDALH
QRMRAERVMDFGAQMATAARLARAGESVGAQLRATYRVVLLDEYQDTGHAQRIALSSLFG
GGVDDGLALTAVGDPIQSIYGWRGASATNLPRFATDFPLSDGTPAPTLELRTSWRNPPEV
LHVANEISAEARRRSVTVHTLRPRPDAPPGGVRLALLADVAAEHRWVAEALQQRYRQAAA
DGVAPPTAAVLVRRNSDAAPFAEAIRACGIPVEVVGLAGLLSVPEVADVVAMLRLVSEPT
AGAAAMRVLTGARWRFGAADLAALWRRAAELARTDRVAGPFSAAEIAAQAGPDSDTACLA
DALADPGPAERYSATGYRRVTALAEELTVLRGHLCHPLPDLVAEVRRVMGLDCEVLAAPP
VTGVSGTEQLDAFADVVAGYVEGRVGQASLPGLLAYLDAAAVVENGLAPAAPAVAADRVQ
ILTVHAAKGLEWQVVAVPHLVARVFPSTASRRSWLSDAAELPPLLRGDRAEPGGSARLDG
GEVKLGPPHQHRGSARLDEGEPKLGPPHGPGDHGVPVLDTGAVTNRKQLSDTISEHLRRL
DQRRVDEERRLLYVAVTRAEDTLLVSGHHWGAGETKPRGPSEFLTELKAVIDDSAAAGTP
CGSIEQWADAPAGGERNPLGDNVSEGNWPVDPLAGRRSDVERGAALVSAALRADPAPDAE
PVNGSRAGSWSADVDALLAERARVAAQPARTLPSQVSVSGLVELSRDPIGAAQRLTRRLP
ARPDPHALLGTAFHDWVQRFYGAERLFELDDLPGAADADTARADAEELADLQAAFLDSPW
AARSPAAVEVPFEMTFGQTVVRGRIDAVFAEPDGGVTVVDWKTGAVPDGPEARRHAAVQL
AVYRLAWAALTDCPESRVRAAFHYVRTGTTVVPDELPDAAELAALLTGADPDGYSGSVRQ
ADR
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcccgctacgaccccgccgagctggcagcagcgctcgggttgcaccagcccacc
gaggagcaggcggcggtcatcgccgcaccgccgggtccgctggtggtcatcgccggggcc
ggcgccggcaagaccgagacgatggccgcccgggtggtgtggctggtcgccaacggctac
gccgatccgggccaggtgctggggttgacgttcacccgcaaggccgccggccaactgctg
cgccgcgtccgttcccggctggcccggctggccggcaccggcttgttgatccccgagccg
ggcttcgccggatcggccggtggttcggcaacgccgacggtgagcacctaccacgcgttc
gccggtgcgctgctgcgcgagcacgggctgctgctcgggatcgaacccgatacccggctg
ctcaccgagaccgggctgtggcagctcgcgttcgacgtggtcagtggctacccgggcgag
ctgcgcaccgaccgggacccggccgcgatcaccgcgatggtgttgcgcctggccgggcag
ttggccgaacacctggtggacaccgatgcgctgcgcgacacccacctggagttggagcgg
ctggtccacaccctgccgcccggaccgcgtcagcgcgccgaccccaaccagtcgctgctc
aagatgctggacacccagaccgaacgcgcctcgctggtaccgctgatcgacgcactgcac
cagcggatgcgggcggagcgggtgatggacttcggtgcgcagatggccaccgccgccagg
ctggcgcgggccggcgagtccgtcggcgcgcaactgcgcgccacctaccgggtggtgttg
ctcgacgagtatcaggacaccggccacgctcagcgcatcgcgctgtcatcactgttcggc
ggcggcgtcgatgacgggctggccctgacggcggtgggcgacccgattcagtcgatctac
ggctggcgcggcgcctcggcgaccaacctgccccgattcgccaccgacttcccgctctcc
gacggcacccccgccccgacgttggaactgcggaccagctggcgcaacccgccggaggtg
ctgcacgtcgccaatgagatctccgcggaggcccggcggcgttccgtcaccgtgcacacg
ttgcggccgcggccggacgcgcccccgggcggggtgcggctggcgctgctggccgacgtg
gccgccgaacaccggtgggtggccgaggcgctgcaacagcgctaccggcaagcagcggcc
gacggcgtcgctccccccaccgccgcggtgctggtacggcggaactccgacgccgcgccg
ttcgccgaggcgatccgggcctgcggcatcccggtcgaggtggtcgggctggccgggctg
ctgtcggtgccggaggtcgccgacgtggtggcgatgctgcggctggtgtccgagccgacc
gccggcgccgcggcgatgcgggtgctgaccggtgcgcggtggcggttcggtgccgccgac
ctggccgcactgtggcggcgggcggccgagctggcccgcaccgatcgggtggccgggccg
ttctcggccgccgagatcgccgcgcaggccgggcccgattccgacaccgcgtgcctggct
gatgctctcgccgacccgggcccggcggagcgctattcggccaccggataccggcgcgtc
accgcgctggccgaggagctgaccgtgctgcgcggccacctgtgccatccgctgcccgac
ctggtcgccgaagtgcgccgggtgatgggcctggattgcgaggtgctcgccgcgccgccg
gtgaccggagtgtcgggtaccgaacagctcgatgcgttcgccgacgtggtggccggctac
gtggaaggacgcgtgggtcaggcatcgctgccgggcctgctggcctacctggatgcggcc
gccgtggtggagaacgggttggcgccggccgcacccgcggtggccgccgaccgggtccag
atcctgacggtgcacgccgcgaagggactggaatggcaggtggtggcggtgccgcacctg
gtggcgcgggtgtttccgtcgaccgcgtcgcgccgcagctggctctcggatgccgccgaa
ctgccgccgctgctgcgcggcgaccgcgccgagcccggcggttcagcgaggctcgacgga
ggagaggtgaagctgggaccgccgcatcaacaccgcggttcagcgaggctcgacgaagga
gagccgaagctgggaccgccgcatgggcccggcgatcacggcgtcccggtgctcgacacg
ggcgcggtcacgaatcgaaagcagctgtccgacaccatctccgagcatctgcgccggctg
gatcagcgccgtgtcgacgaagagcgtcggctgctctacgtcgcggtcacccgcgccgag
gacaccctgctggtctccggtcaccactggggcgccggtgagaccaagccgcgcggcccg
tcggagttcctgaccgaactcaaggcggtgatcgacgattcggcggccgccgggacgcct
tgcgggtcgattgagcagtgggcggacgcgccggccggcggcgagcgaaacccgctgggc
gacaacgtcagcgaagggaactggccggtcgatccgctggccggccggcggagcgacgtc
gaacgtggcgcggcgctggtcagcgcggcgctcagagccgacccggcgccggacgctgag
cccgtgaacggatcgcgggccggctcgtggtctgccgacgtcgatgcgctgctggccgag
cgggcccgcgtggctgcgcaaccggcccggacgctgcccagccaggtctcggtgagcggt
ctggtcgagttgagccgcgaccccatcggcgcagcccagcggctgacccgccggcttccc
gcacgcccggacccgcatgcattgctgggcaccgcatttcacgattgggtacagcggttc
tacggtgccgagcggctcttcgagctcgacgacctgcccggtgcggccgacgccgacacc
gcccgggccgacgccgaagagctggcggacctgcaggcggcattcctggattcgccgtgg
gcggcccgctcacccgccgccgtcgaggtgcccttcgagatgaccttcgggcagaccgtg
gtgcggggccgcatcgacgcggtgttcgccgagccggacggcggcgtcaccgtggtggac
tggaagaccggtgcggtccccgacggccccgaggcgcgccgtcacgccgccgtccagctc
gccgtctaccggctggcctgggccgcgctgaccgactgcccggaatcgcgggtgcgggcc
gccttccactacgtgcgcaccgggaccaccgtcgtccccgatgagctgcccgatgccgcc
gagctggccgcactgctcaccggtgccgacccggatggctacagtgggtccgtgcgtcag
gctgaccggtga
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