Melaminivora jejuensis: LVC68_06580
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Entry
LVC68_06580 CDS
T07790
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mje
Melaminivora jejuensis
Pathway
mje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVC68_06580 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mje03019
]
LVC68_06580 (rnr)
03016 Transfer RNA biogenesis [BR:
mje03016
]
LVC68_06580 (rnr)
Enzymes [BR:
mje01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LVC68_06580 (rnr)
Messenger RNA biogenesis [BR:
mje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVC68_06580 (rnr)
Transfer RNA biogenesis [BR:
mje03016
]
Prokaryotic type
tRNA degradation factors
LVC68_06580 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UHJ66173
LinkDB
All DBs
Position
1415767..1418082
Genome browser
AA seq
771 aa
AA seq
DB search
MYNQKKHPGTAAAQISSDEIEGSVQGHRDGHGFVLPDGGGQDIYLPPNEMRAVLHKDRVR
VRVVRHDRRGRPEGRVLEIVERAPQPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGS
AKVGQVVVVQLTEPPALYGQPVGRVIEVLGEVDDPGMEVEIAVRKYGVPHEFSEAALAQA
KALPDKVRAQDRRQRVDLRDIPLVTIDGEDARDFDDAVYCEPARVGRSKGWRLLVAIADV
SHYVETGSAIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPHVDRLSMVCDMLITAK
GEIHAYQFYPAVMCSHARFTYTDVAAILGNTRGPEAARHQERVPDLLNLHDVYRALLAAR
HARGAVDFETVETQIICDDNGRIDRIVPRVRTEAHRLIEEAMLAANVCSADFIGEGKRAG
LYRVHEGPTPEKLEILRGYLKAMGVGMTLGDEPRPGDFQSIAEATKDRPDAQQIHTMLLR
SMQQAIYTPSNSGHFGLAFDAYTHFTSPIRRYPDLLVHRVIRSILNGTRYTLPALPTPGE
AQFKLAKRLAAKVAAPTQQPHRAQNPASLREMQAWEAAGLHCSANERRADEASRDVEAWL
KCQYMREHLGEEYSGTVSTVTSFGLFVTLDALYVEGLVHITELGGEYFKFDEARQELRGE
RTGIRYGIGTRVQVQVSRVDLDGRRIDFRLVRDELASLQGAENRPRNGDRRRKDAGQDGG
GKPARAARDKPGENGKAAQKTVRKTAPNGKSDPAGRSRAASDGKPAGRKRS
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgtacaaccaaaaaaaacacccgggcacagcggctgctcaaatttcttccgacgagatc
gagggaagcgtccagggccaccgtgatggtcatggcttcgtgttgcccgatggcggtggt
caggacatctatctgccgcccaacgagatgcgcgccgtgttgcacaaggacagggtgcgc
gtgcgcgtggtgcgccacgacaggcgtggccggcccgaggggcgcgtgctggagatcgtc
gagcgggcaccgcagcccatcattgggcggctactgcaggaaagcggcgtctggctggtc
gcgcccgaggacaagcgctatggccaggatgtgctgatccccaagggtgccaccggctcg
gccaaggtcgggcaggtggtcgtggtgcagttgaccgagccgcctgcgctttacggccag
ccggtgggtcgggtgatcgaggtgctgggcgaagtcgatgacccgggcatggaggtcgag
attgcagtgcgcaaatatggcgtgccgcatgaattctccgaagccgccctggctcaggcc
aaggcattgcccgacaaggtgcgcgcgcaggacaggcgccagcgtgtcgatctgagggat
atcccactggtcaccatcgatggcgaggatgcgcgcgacttcgacgatgccgtctattgc
gagccggcccgcgtgggccgcagcaagggctggcgcctgctggtggcgattgccgacgtc
agccactatgtggaaaccggcagcgccatcgacgtggacgcctatgaccgcgccaccagc
gtgtatttcccgcgccgcgtgattcccatgctgccggagaagctctccaacggcctgtgc
tcgctcaacccccatgtcgatcgcctgagcatggtctgcgacatgctgatcacggccaag
ggcgagatccatgcctaccagttctacccggcagtcatgtgcagtcatgcacgctttacc
tataccgacgtggcagccatcctgggcaatacccgcgggccggaggctgcgcgccaccag
gagcgcgtgcctgatctgttgaacctgcacgatgtctatcgcgccctgctggcggcgcgc
catgcgcgtggtgcagtggacttcgagaccgtggagacgcagatcatctgcgacgacaac
ggccgtatcgacagaatcgtgccgcgcgtgcgtaccgaggcgcaccgcttgatcgaggag
gccatgctggctgccaatgtctgcagcgccgacttcatcggcgaaggcaagcgcgccggc
ctgtaccgtgtccacgaaggcccgacgccggaaaaactggaaatcctgcgcggctatctc
aaggctatgggcgtgggcatgacactgggcgacgagccccggcctggcgacttccagtcc
atcgccgaagccaccaaggatcgcccggacgcccagcagatccacaccatgctgctgcgc
tccatgcagcaggccatctacacgcccagcaacagcggccacttcggcctggcgtttgat
gcctatacgcatttcaccagtcccattcgccgctaccccgatctgctggtacaccgcgtc
atccgctccatcctgaatggcacgcgctacacgctgccggccttgcccacgccgggcgag
gcgcaattcaagctggccaagcgcctggcagccaaggtggctgcgcccacccagcagccg
cacagggcgcaaaatccggccagcctgcgtgagatgcaggcctgggaagctgccggcctg
cactgcagcgccaacgaacgtcgcgccgacgaggccagccgcgatgtcgaagcctggctc
aagtgccagtacatgcgtgagcatctgggcgaggagtacagcggcaccgtcagcacggtg
accagttttggcttgttcgtgaccctggatgcgttgtatgtcgagggcctggtgcatatc
actgaactggggggggagtatttcaagttcgacgaggcccgccaggagctgcgcggcgag
cgcaccggcatccgctacggcatcggcacacgcgtgcaggtgcaggtcagccgggtcgat
ctggacgggcggcgcatcgacttccggctggtgcgcgacgaactggctagcctgcagggc
gccgagaatcgcccgcgcaacggtgacagacgcagaaaggacgccggccaggacggtggc
ggcaagccggcgcgagcggcgcgcgacaaaccaggcgagaacggaaaagctgcgcagaaa
actgtcaggaaaaccgcccccaatggcaaatcagacccagcaggccgcagtcgtgcagcc
agcgacggcaagccggcaggtcgcaagcgcagctga
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