Melaminivora jejuensis: LVC68_10400
Help
Entry
LVC68_10400 CDS
T07790
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mje
Melaminivora jejuensis
Brite
KEGG Orthology (KO) [BR:
mje00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mje03019
]
LVC68_10400 (hrpA)
Enzymes [BR:
mje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LVC68_10400 (hrpA)
Messenger RNA biogenesis [BR:
mje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LVC68_10400 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
AAA_25
T2SSE
nSTAND3
AAA_23
AAA_30
NACHT
SRP54
PhoH
FtsK_SpoIIIE
TsaE
Motif
Other DBs
NCBI-ProteinID:
UHJ63821
LinkDB
All DBs
Position
complement(2255515..2259627)
Genome browser
AA seq
1370 aa
AA seq
DB search
MSLQIRFPEALPVSARRQEIMQAMSEHQVIIVCGETGSGKTTQLPKMALALGRGRANAAP
GQRGRLIGHTQPRRIAASSVAKRIAEELGTAPGEVVGYKVRFADTLHKGASIKLMTDGIL
LAETQGDPLLQQYDTLIIDEAHERSLNIDFLLGYLRQILPRRPDLKVIVTSATIDAERFA
RHFASADGQPAPVIMVSGRTYPVEVRWRPWEESREYDLQDAIADAVDELWAGAGAAAGGD
ILIFLPGEREIREAADHLRKHLQRSPLLRNAEVLPLFSRLSQAEQERIFEPHGGRRIVLA
TNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGI
CIRLYAEDDFLQREAFTDPEILRSSLAGVILRMKSLGLGDVVNFPFLQAPSGRAIADGYQ
LLQELGAVDERGQLLPMGRELSRLPLDPRVGRMILEARTRGALAEVLIVASALSVQDVRD
RPLDAQQQADQQHAKFDDDKSEFSGYLRLWQWLHDARGGKAVAMSRREMAAQSATPAAAP
RNMAALPVAKRGVGGQPPSQPSPKGGRSQSLPPPLGEGRGGGQQRAQASHSSLPPQDQAG
DTHKLSNRQWEQLLRSNFINIRRVREWRDIHSQLLTVVREHQWPLNAEPAGYDALHLSML
SGLLGNIGFKPEEADTYLGAHGIKFHPHPGAHLSRKPGRWIVAAEQVETTRLYGRGIAAI
EPQWLEEVGSHLLKKQLLEPHWSKKQADVVALERATLYGLVVYSGRRISYGRIDPHEARQ
IFIRRALVEGEWDAPWQFLSANRKLVARVEELEHKSRRQDVLVDDELIYAYYDQQLPQEV
FSGATFERWFRAASRQQPELLRLTRDELMRHEAAGITTDNFPRTVKLGGVDCSASYLHEP
GDARDGITVTVPLFVLNQVSEERAEWLVPGMLKEKLQALLKSLPQRPRSRFVPLPESAAR
LAERFTHDEHWARGSLLEALLKVVRDETSLDVKRADFKLDMLKPHLFMNFRVIDEHGRQL
GQGRNLAALKAELGARARGAFQALASLKIAGSADPEPVSVQKDSQKTTRQALAAIKNEAA
AAAPVLSAEARHTAWSFGELPELMEITRGSQTLIGFAALIDQGDAVTIEVFDEPELAAAR
HRAGLRRLFALQIRDALKYLEKNIPDLTAMAVAYMPLGTQEQLRAQIIDVALERAFMAEP
LPINEAQFQQRVHEGRTRLTLIANEVARLAATILQEYAAAQRKLKDARNAREAAADIGQQ
LQRLMPRNFLAATPWVQLQHLPRYLKAMVVRLDKQRADAARDAQRMKELQPLEQRYWRLL
AERRGQHDSRMQEYRWMLEELRVSLFAQELRTPYPVSSKRLDKVWAQLVA
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgcagatccgttttcccgaagccctgcctgtctccgcgcgccggcaggaaatc
atgcaggccatgagcgagcaccaggtcatcatcgtctgcggcgagaccggctcgggcaag
accacgcagctgcccaagatggcgctggccctgggccggggccgcgccaacgccgcaccc
ggccagcgtggccggctgatcggccacacccagccacggcgcatcgctgcctcatccgtg
gccaagcgtatcgccgaagagctgggcaccgccccgggcgaggtggtcggctacaaggtg
cgctttgccgacacgctgcacaagggcgcgtccatcaagctgatgaccgacggcatcttg
ctggccgagacgcagggcgacccgctgctgcagcagtacgacacgctgatcatcgacgag
gcgcacgagcgcagcctgaacatcgacttcctgctgggctacctccggcagattctgccc
cggcggcccgacctgaaggtcatcgtgacctcggccaccatcgacgccgagcgctttgcc
cggcactttgcgtctgccgacggccagccggcgccggtcatcatggtctcggggcgcacc
tatccggtggaggtgcgctggcggccctgggaggaaagccgcgagtacgacctgcaggat
gccatcgccgacgccgtggacgagctgtgggccggcgccggcgctgctgcgggcggcgac
atcctgatcttcctgcccggcgagcgcgagatccgcgaagctgccgaccacctgcgcaag
cacctgcagcgctcgcccctcctgcgcaatgccgaggtgctgccgctgttttcgcgcctg
tcgcaggccgagcaggagcgcatcttcgagccgcacggcggtcggcgcatcgtgctggcc
accaacgtggccgagacttcgctcactgttccaggcatcagatacgtcatcgacgcaggc
acggcgcgcgtcaaacgctactctttcaggagcaaagtggagcagctgctggtcgagccc
atcagccaggcggcggccaaccagcgcgccgggcgctgcgggcgcgtggccaacggcatc
tgcatccggctatacgccgaggacgatttcctgcagcgcgaggccttcaccgacccggaa
atcctgcgctcctcgctggccggcgtcatcctgcgcatgaagtcgctgggcctgggcgac
gtggtgaacttccccttcctgcaggcgccgtcgggccgggcgattgccgacggctaccag
ctgctgcaggagctgggcgcggtcgatgagcgcggccagttgctgcccatggggcgcgag
ttgtcgcgcctgccgctggatccgcgcgtgggccggatgatcctggaggcgcgcacgcgc
ggcgcgctggccgaggtgctgatcgtcgcctcggccctgtcggtgcaggacgtgcgcgac
cggcccctggacgcccagcagcaggccgaccagcagcacgccaagttcgacgacgacaag
agcgagttcagcggctacctgcgcctgtggcagtggctgcacgacgcgcgtggcggcaag
gccgtggccatgagccggcgcgagatggcagcgcaatcggccacgccagcggcggcgccg
cgcaacatggcggcgctgccggtggccaaacggggggtgggcgggcagcccccatcccag
ccttcccccaaggggggaaggagccagagcctccctcccccgctgggggagggccgggga
gggggccagcagcgggcgcaggcatcccactccagcctcccgccgcaggatcaggcgggc
gacacccacaaactcagcaaccgccagtgggagcagctgctgcgcagcaacttcatcaac
atccgccgcgtgcgcgagtggcgcgacatccactcgcaactgctcaccgtggtgcgcgag
caccagtggccgctcaacgccgagccggcgggctacgacgcgctgcacctgtccatgctg
tcgggtctgctgggcaatatcggcttcaagcccgaggaggcggatacctacctgggcgcg
cacggcatcaaattccacccgcacccgggcgcgcacctgtccagaaagcccgggcgctgg
atcgtcgccgccgagcaggtcgagaccacgcgcctgtatggccggggcatcgccgccatc
gagccgcaatggctggaggaggtcggcagccacctgctgaaaaaacaattgctggagccg
cactggagcaagaagcaggccgacgtggtggcactggagcgcgccacgctgtacggcctg
gtggtctatagcggtcggcgcatcagctacggccgcatcgacccgcacgaggcgcgccag
atcttcatccgccgcgccctggtcgagggcgagtgggacgcgccctggcagttcctgtcg
gccaaccgcaagctggtcgcccgcgtcgaggagctggagcacaagagccggcgccaggac
gtgctggtcgatgatgagctgatctacgcctactacgaccagcagctgccgcaggaggtc
ttcagcggcgcgaccttcgagcgctggtttcgcgcggccagccgccagcagcccgagttg
ctgcgcctgacgcgcgacgagctgatgcgccacgaggccgccggcatcaccaccgacaac
ttcccgcgcaccgtcaagctgggcggcgtggactgcagcgccagctatctgcacgagccg
ggcgatgcgcgcgatggcatcacggtgacggtgccgctgttcgtgctcaaccaggtcagc
gaggagcgcgccgaatggctggtgccggggatgctcaaggaaaaactccaggccctgctc
aagagcctgccgcagcgccccagaagccgctttgtgccgctgcccgagagcgcggcgcgg
ctggccgagcgcttcacgcacgacgagcactgggcgcgcggcagtctgctggaggcgctg
ctcaaggtggtgcgcgacgagacctcgctggatgtcaagcgcgccgacttcaagctggac
atgctcaagccccacctgttcatgaatttccgcgtcatcgacgagcatggccgccagctc
gggcaggggcgcaatctggccgcgctcaaggccgagctgggcgcgcgcgcacgcggtgca
ttccaggcgcttgcttcattaaagatagctggcagcgctgatccagagccagtttcagta
caaaaggattcgcaaaagaccaccagacaagcgctggcagctatcaaaaacgaagctgcg
gctgcggctccggtgctgagcgccgaagcccgccacactgcctggagctttggcgagttg
cccgagctgatggaaatcacgcgcggcagccagacgctgatcggctttgcggcgctgatc
gaccagggcgatgccgtgaccatcgaggtcttcgatgagccggaactggctgccgcgcgc
caccgcgcgggcctgcgccggctgttcgccctgcagatccgcgacgcgctgaaatacctg
gaaaagaacatccccgatctgacggccatggccgtggcctacatgccgctgggcacgcag
gagcaattgcgcgcgcagatcatcgacgtggcgctggagcgcgccttcatggccgagccg
ctgcccatcaatgaggcgcagttccagcagcgcgtacacgagggccgcacccggctgacg
ctgatcgccaacgaggtggcgcgcctggccgccaccatcttgcaggaatacgccgccgcc
cagcgcaagctcaaggacgccaggaatgcccgcgaggcggctgccgacatcggccagcag
ctgcagcgcctgatgccgcgcaacttcctggcggccacgccgtgggtgcagctgcagcac
ctgccgcgctacctcaaggccatggtcgtgcgcctggacaagcagcgcgccgacgccgca
cgcgacgcccagcgcatgaaggagctgcagccgctggagcagcgctactggcgcctgctg
gccgagcgccggggccagcacgacagccggatgcaggagtaccgctggatgctcgaagaa
ctgcgcgtgagcctgttcgcgcaggagctgcgcacgccgtacccggtcagcagcaagcgg
ctggacaaggtctgggcgcagctggtggcctga
DBGET
integrated database retrieval system
