Melaminivora jejuensis: LVC68_11925
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Entry
LVC68_11925 CDS
T07790
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mje
Melaminivora jejuensis
Pathway
mje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVC68_11925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mje03019
]
LVC68_11925
03009 Ribosome biogenesis [BR:
mje03009
]
LVC68_11925
Enzymes [BR:
mje01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LVC68_11925
Messenger RNA biogenesis [BR:
mje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVC68_11925
Ribosome biogenesis [BR:
mje03009
]
Prokaryotic type
rRNA processing factors
LVC68_11925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
UHJ64083
LinkDB
All DBs
Position
2567633..2570986
Genome browser
AA seq
1117 aa
AA seq
DB search
MKRMLINATQAEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQARIQDVIREGQELIVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAIDGAARAGRGAFLIYQESSLVIRAIRDYFNSDIGDILIDTDDIYEQAQ
QFMAHVMPEHAPKVKRYRDDAPLFSRFQIEHQIESAYSRTVILPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVEQR
LREALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPLCDGTGHVRDTEGFALQ
MLRMIQEECMKDNTAAVHCQVPVEVASFLLNEKRAEIAKIELKQRVSVVLIPNKTLATPH
YKLERLKHDDARLEEREASYKLAEQEQEPTHITRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPQSASQPSRSSGGRGGQQPRSAAAAATPVQPPAPAPEQGFFAWLKSLFGFGRSPAPVA
APVAQPAPQPEAPARSEGRRDGRSGGERSRRSRSDASRDGTADTAQGEPRSRRSQGAGGA
ERSTEGREGRESREGSREGSRNGRGNRAERSESSQGEAGSDSRRAPREGRASRERAERQP
VAEGQLEQHASHSPANESEGSAATGQPARGERTARSSERNGERSEERNGERRSRRSDERG
PRTIDADAPAAPLQAGGQPETELLAPSAGAARDDEALTAQDGSSASDTGEQPRRERRSRD
RYGRDRRAARHAASEANEANEANGSGDVSDASDLATGHGAAQPAREPVALDIDPVAGMAP
QGAEQPARRSYFAAAPAPVGPAAAAAQPASPPAAAVPAPQAAASAEALPLPLPLPATPAA
EASDSASSSSSSASTGQAAVDERQQDAPAAQPAPAPAPAQHCAQPQEQQEPQMQQPAQGG
SALPRVPVFELPVQALSDMASASGLQWVNSDAQKIAAAQAAIAAEPQPVHVPRERPAPVV
LDEGPLVLVETRRDLRELRLPFEQEQQQAQAPGATTA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcaggctgaagaacggcgcctggccatcgtggac
ggccagaagctgctcgactacgaaatcgagatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtggtcacgcgcgtggagccctcgctggaggcttgcttcgttgactat
ggcgaggatcgccacggcttcctgcccttcaaggaaatctccaagcagtactttgccgag
ggcgtgtcgcccagccaggcacgcatccaggacgtgatccgcgagggccaggagctgatc
gtccaggtcgaaaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcgtcagc
ctggcgggccgctatgtcgtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgg
cgcatcgagggcgaggatcgcgccgagctcaaggaggcgatggatcagctcgaataccca
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgcaccgcgcccgagctgcaa
tgggatctgaactacctgctgaaactgtggaacgccatcgacggcgcggcccgcgccggg
cgcggggcatttctgatctaccaagagtccagcctggtcatccgcgccattcgcgattac
ttcaacagcgacatcggcgacatcctgatcgacaccgacgacatctacgagcaggcgcag
cagttcatggcgcacgtgatgcccgagcacgcgcccaaggtgaagcgctaccgcgatgac
gcgccgctgttttcgcgcttccagattgagcaccagatcgaatccgcctactcgcgcacc
gtcatcctgccctcgggcggcgccatcgtgatcgaccacaccgaggcgctggtgtccgtg
gacgtgaactcggcgcgcgccatcaagggcggcgacatcgaggagaccgccacccgcacc
aacctggaggcggccgacgaagtggcgcgccagatgcgcctgcgtgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagtccaagaaccgccgcgaggtcgagcagcgc
ctgcgcgaggcgctgcgccaggatcgcgcgcgcgtgcagttcggcacgatttccaagttc
ggcctgatggagatgagccgccagcgtctcaaaccctcgctgtccgagggcgcgcacatc
cgctgcccgctgtgcgacggcaccgggcacgtgcgcgacaccgagggttttgcgctgcag
atgctgcgcatgatccaggaggagtgcatgaaggacaacaccgccgccgtgcattgccag
gtgccggtggaggtggccagcttcctgctcaacgaaaagcgcgccgagatcgccaagatc
gaactcaagcagcgcgtcagcgtggtcttgatcccgaacaagaccctggccacgccgcac
tacaagctcgaacgcctcaagcacgacgacgcgcgcctggaagagcgcgaagccagctac
aagctggccgagcaggaacaggagccgacgcacatcacgcgccgctcgcaggagccgacc
aacaagcagaccccggtcatcaagggcgtgctgcccgatgcgccggcgccggtggccgag
ccgcgcccgcagtcggccagccagccatcgcgcagctccggcggacgcggcggccagcag
ccgcgcagcgctgcagccgcagccacgccggtgcagccgccggcaccggcgcccgagcag
ggcttcttcgcctggctcaagagcctgttcggctttggccgcagcccggcgcccgtggcc
gcgcccgtggcccagcctgcaccccagcccgaagcaccggcacgcagcgaaggacggcgc
gatgggcgctccggtggcgagcgcagccgccgcagccgcagcgacgccagccgcgacggc
actgccgatacggcgcagggcgaaccgcgcagccgccgcagccagggtgctggcggcgcc
gagcgctccaccgaaggccgtgagggccgagaaagccgcgaaggcagccgcgaaggcagc
cgcaatggccgtggcaaccgcgccgagcgcagcgaatccagccagggcgaggccggcagc
gacagccgccgcgcgccccgcgaaggacgcgccagccgcgagcgcgccgagcgccagccc
gtggcagaaggccagttggagcagcacgccagccacagcccggccaacgagtccgagggc
agcgctgccaccggccagccggcacgcggcgagcgcacggcacgcagcagtgagcgcaac
ggcgaacgcagcgaggagcgcaacggcgagcgccgcagccgccgcagcgacgagcgcggc
ccgcgcaccatcgacgccgatgcaccggcagcgccgctccaggccggcgggcagcccgag
actgagctgctggcgccgtccgccggcgccgcccgggacgacgaggcgctgaccgcccag
gacggcagcagcgccagcgacaccggcgaacagccgcgccgcgagcgccgttcgcgcgac
cgctatggccgcgaccgccgcgccgcccgccacgcagccagcgaggcgaacgaagcgaac
gaggccaacggaagcggcgatgtcagcgacgccagcgatctggccaccggccacggcgct
gcccagccggcgcgggagccggtcgcgctggacatcgacccggtagccggcatggcaccc
cagggcgccgagcagccggcgcggcgcagctacttcgccgctgccccggcaccggtcggg
cctgctgccgctgcggcgcagccagccagcccgccggccgcagccgtgcctgccccgcag
gctgccgccagcgccgaagccctgccgctgcctttgccgctgccggccacgccagcagcc
gaggcctcggacagcgccagcagcagcagcagcagtgccagcaccggccaggctgccgtt
gacgagcgccagcaggacgcccctgccgcccagccggcaccggcacctgctcccgcccag
cattgcgcccagccgcaggagcagcaggagccgcagatgcagcagcccgcccagggcggc
agcgccctgccgcgcgtgccggtcttcgagctgccggtgcaggcgctctccgacatggcc
agcgcctcgggcctgcaatgggtgaattcggacgcgcaaaagatcgccgccgcgcaggcc
gccattgccgccgagccgcagcccgtccacgtgccgcgcgagcgcccggctccggtggtg
ctggacgaaggcccgctggtgctggtggaaacccgccgcgacctgcgcgagctgcgcctg
cccttcgagcaggagcagcagcaggcccaggcgcccggcgccaccacggcctga
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