Methanocaldococcus bathoardescens: JH146_1113
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Entry
JH146_1113 CDS
T03253
Name
(GenBank) Transcription factor TFIIB cyclin-related protein
KO
K03124
transcription initiation factor TFIIB
Organism
mjh
Methanocaldococcus bathoardescens
Pathway
mjh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mjh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
JH146_1113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjh03021
]
JH146_1113
Transcription machinery [BR:
mjh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
JH146_1113
Prokaryotic type
Archaeal type
TFB
JH146_1113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Intein_splicing
LAGLIDADG_3
Zn_Ribbon_TF
Sigma70_r4
BRF2-like_C_cyclin_rpt
Lar_restr_allev
HTH_AsnC-type
HTH_Tnp_ISL3
TMIE
RPA_interact_C
Motif
Other DBs
NCBI-ProteinID:
AIJ05956
UniProt:
A0A076LCM9
LinkDB
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Position
1111344..1113788
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AA seq
814 aa
AA seq
DB search
MEALKTKEEKNTKEKKIITKAEKSEKKEGNIGEEEIICPICGSKEVVKDYERAEIVCAKC
GCVIKEKLFDIGPEWRAFDHEQKIKRCRVGAPMTYSVDYSEPIIIRENGEIKVIKIGELI
DRIIENAENVRREGILEIAKCESIEVIAFDSNYKFKFMPVSEVSRHPVSEMFEIVVEGNK
KVRVTGSHSVFTIKDNEVVPIRVDELKVGDILVLAKELPYIEEDIEINLIDIVKDLENVY
IQFDYPYKNKDWRRRKSAPLKYVLENNIPIPDNATIRCRSGKSLPVKIKVDEKFAKILGY
FIAEGHYDDKKIVFSFGSHEKEYINEVVGYFKSLNLNPIVYEKRSSVQIEINSKILVELF
KKLNIRSGAKNKRVPSIVFKFPAKLKKAFLIGYFNGDGNLYINKKYSTVQLKAVSASKEL
IEDLSFLLLQLGINANYGEEFIKGHVIEKTGQYVKDSHSYILTITNPEDIEKLGYISNYQ
KENKKPPISELIPAPYEYRKEWKCRDRDKIGRDLALKIAKKYNDRKLEKLINSDFIFLKI
KEINKIKPTNGYAYDLTVPNAENFVAGFGGFVLHNTIHDKGLSTVIDWRNKDSYGKDLSA
NKRAQLYRLRKWQRRIRVSDAAERNLAFALSELDRITSKLGLPRHVRENAAIIYRGAVEK
GLIRGRSIEGVVAAAIYAACRRCRVPRTLDEIAEASRVDRKEIGRTYRFLARELGIKLTP
TNPIDYVPRFASELGLPGEVESKAIQILQQAAEKGLTSGRGPTGVAAAAIYIASVLLGCR
RTQREVAEVAGVTEVTIRNRYKELTEHLDIDVTL
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggaagctctcaaaactaaagaagagaaaaacacaaaagaaaagaaaattataacaaaa
gctgaaaaatctgaaaaaaaagaaggaaatattggagaagaagaaattatttgtccaatt
tgtggtagcaaagaagttgttaaagattatgaaagggctgaaatcgtctgtgctaaatgt
ggatgtgttattaaagaaaaattattcgatattgggccagagtggagagcatttgaccat
gaacaaaagattaagagatgtagagttggagctccaatgacttatagtgttgattacagt
gagccaataataattagagagaatggagaaataaaagttattaagattggagaacttata
gatagaattattgaaaatgcagagaatgtcagaagagaaggtatcttagaaatagctaaa
tgtgagagtattgaagttattgccttcgacagcaattacaaatttaaatttatgccggtt
tcagaggtttcaagacatccagtaagtgaaatgttcgaaatagttgttgaaggaaataaa
aaggttagagttactggaagccatagcgtctttaccataaaagataatgaagttgttcca
ataagggttgatgagctaaaagttggagatatattagttttagcaaaagagttgccatat
attgaagaagatattgaaattaacctaatcgatattgtaaaagatttagaaaatgtttat
atccagtttgactatccttataagaataaagattggaggagaagaaaatctgctccattg
aaatatgtcttagaaaataacattccaattccagacaacgccacaattagatgtagaagt
ggcaaatccctcccagtaaaaataaaagtagatgaaaaatttgccaagatattgggatat
ttcattgcagaaggacattatgatgataaaaaaattgtattttcctttggttctcatgaa
aaagaatacataaatgaggttgttggttacttcaaatccttaaacttaaatccaattgtt
tatgagaagcgttcaagtgtccaaattgagataaacagcaaaatattagttgagttattc
aaaaagttaaatataagaagtggagcaaagaacaagagagtgccatcaattgtattcaaa
ttcccagcaaagttaaagaaagcatttttaattggatacttcaatggagatggtaactta
tacataaataaaaagtattcaacagttcagttaaaggcggtttctgcatcaaaagaactt
attgaagatttatccttcttactattgcagttaggaattaatgcaaactatggagaagag
tttattaaaggacatgtaattgaaaaaactgggcagtatgttaaagatagccattcctat
atattaacaataacaaatcctgaagatatagaaaaattgggatacataagcaattatcag
aaagaaaacaaaaaaccaccaatttctgagttaatcccagccccttatgagtatagaaaa
gaatggaaatgtagagatagggataaaattggaagagaccttgcattaaaaattgctaaa
aaatacaacgatagaaaactcgaaaaacttatcaactctgacttcatattcctaaaaatt
aaagaaattaacaagataaaaccaactaacggatatgcttatgatttaacagtgcctaat
gctgaaaacttcgttgctggatttggaggatttgtattgcataacactatccatgataag
gggttatcaacagttattgattggagaaataaagatagttatggaaaagatttatctgca
aataaaagagctcaactttacagattaagaaaatggcagaggagaattagagttagtgac
gctgcagaaagaaacttagcatttgctttatcggaattagatagaattacatcaaaactc
ggattaccaagacacgttagggaaaatgcagctataatttacagaggggctgttgagaaa
ggattaataagaggtagaagtattgagggagttgttgcagctgctatttatgctgcttgt
agaagatgtagagtgccaagaactttagatgaaattgctgaggcttcaagagtggataga
aaagaaattggaagaacttatagatttttagcaagagaattaggtataaaattaactcca
acaaatcctatcgattatgtgccaagatttgcatctgaacttggattacctggagaagtt
gagtctaaagctatacagatattacaacaagctgctgaaaaaggattaacaagtggtaga
ggacctacaggggttgctgctgcagcaatatatatagcaagtgtccttcttggctgtaga
agaactcagagagaagttgctgaagttgcaggagtaacagaagtaacaataagaaacaga
tacaaggagctaacagaacacttggatattgatgtaactttgtaa
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