Mucilaginibacter jinjuensis: PQO05_03945
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Entry
PQO05_03945 CDS
T08815
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQO05_03945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjj03019
]
PQO05_03945
Enzymes [BR:
mjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PQO05_03945
Messenger RNA biogenesis [BR:
mjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQO05_03945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
SUa-2TM
ERCC3_RAD25_C
Utp25_C
DUF4941
DUF6421
AAA_22
UvrD-helicase
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
WCT13085
UniProt:
A0ABY7T9C3
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All DBs
Position
852381..853706
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AA seq
441 aa
AA seq
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MLFQDLKLIEPILKALKTEGYTTPTPIQQQSIPIILQRKDLLGCAQTGTGKTAAFSIPIL
QILHEERLQHKEQKTIKSLILTPTRELAIQIGESIAAYGKHTGLKHLVIFGGVTQNPQVD
SLRRGVDILVATPGRLLDLVNQRYVNLEHIKILVLDEADRMLDMGFVHDVKKIISKIPAK
RQTLFFSATMPKEIQSLADTILNKPEKVEVTPVSSTADTINQSIFFVDKGDKRLLLSHIL
KDKNIKRVLVFTRTKHGADKVVKDLIRTNVTAEAIHGNKSQNARQRALTNFKNSSTRVLV
ATDIAARGIDVDELTHVIQYELPEVPETYVHRIGRTGRAGASGIAFAFCDEEEKELLKDI
HKIIGKTIPVETEHPYPLRELSMAEKAKLALQQKETRKASAQRGASRRGFGRSRDHGGDK
APAGGGSGRSSGGNRNSGGRR
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgctatttcaagatttaaaattaattgagcccatcctcaaggctttaaaaactgaggga
tataccacccccacgcccatacagcaacaatcaatccccattatattacaacgcaaggat
ttattaggctgcgcgcaaaccggtaccggtaaaactgcggccttctctatcccaattctt
caaatactgcatgaagaacgcctgcagcacaaggagcaaaaaacaattaagtcgcttatc
cttacgccaacccgcgagctggctatccagataggcgagagcattgctgcttatggtaaa
catacaggcttaaaacatttggtaattttcggtggtgttacacaaaacccacaggttgat
tcgctgcgccgtggtgttgatattttagttgccacaccaggccgtttgttagacttagtg
aaccagcgatatgttaacctcgaacacatcaagattttggtattggacgaagccgaccgt
atgctggatatgggttttgtacacgatgttaaaaagatcatttctaagatcccggctaaa
agacagaccctgtttttctcggctaccatgcctaaagagatccagtctttggcagatacc
attttaaataaaccagagaaggttgaagttaccccggtttcatcaactgctgataccatt
aaccagtcgattttctttgttgacaaaggcgataaacgcttattgttatcacacatcctg
aaagataaaaacattaaacgtgtgctggtatttacccgtaccaagcatggtgccgataag
gtagtaaaagacctgatccgtaccaatgttactgccgaggccattcacggtaataaatca
caaaatgcccgtcagcgtgcattaaccaactttaaaaacagcagtacccgtgtattggta
gctactgatattgccgcccgcggtattgatgtggatgaactaacccacgttatccagtac
gaattgccggaagtgcccgaaacttacgtacaccgtattggccgtacaggccgtgcaggt
gcaagtggtattgcgtttgctttttgtgatgaggaagaaaaagagctgctgaaagatatt
cacaagatcattggtaaaactatcccggttgaaaccgagcatccttacccattgcgcgaa
ctttctatggccgaaaaagctaagcttgctttgcagcaaaaagaaaccaggaaggcctca
gcacaacgcggagcatcaagacgcggctttggtcgcagtcgcgaccatggtggcgataaa
gcccctgccggtggtggcagcggacgtagctctggcggtaaccgcaacagcggcggcaga
cgctaa
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