Mucilaginibacter jinjuensis: PQO05_06125
Help
Entry
PQO05_06125 CDS
T08815
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mjj
Mucilaginibacter jinjuensis
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mjj03016
]
PQO05_06125
Enzymes [BR:
mjj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PQO05_06125
Transfer RNA biogenesis [BR:
mjj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PQO05_06125
Prokaryotic type
tRNA splicing ligases
PQO05_06125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF7237
Motif
Other DBs
NCBI-ProteinID:
WCT13511
UniProt:
A0ABY7TAZ4
LinkDB
All DBs
Position
complement(1321855..1323357)
Genome browser
AA seq
500 aa
AA seq
DB search
MRKQNSTETSALESAGAQKEKIGNNELKALGINDVDILVNFSRVANGLLKHNVMAKPEIL
ANLEALIDDPIPYALKKGGKFKNLAEDVIALRKEGKFVKQQRSNFKLKEEIAEFPVWGLE
HIEVGALAQMRTAVQLPIAVAGALMPDAHQGYGLPIGGVLATTANTIIPFAVGVDIACRM
CLSIFDLPAEAIDTETDKLKNILVDNTYFGMGCTTKSYFDSSLFDSKSWGETKLIRSLKD
KAYAQLGTSGTGNHFVEWGELDIAEGALTGIPAGKYLALLSHSGSRGFGGAVADYYSRIA
MTKTKLPAEAKHLAWLDLDKDEGQEYWIAMNLAGEYASANHHEIHNKIAHALGVKPISMI
ENHHNFAWKEQLADGTEVMVHRKGATPAGEGVLGIIPGSMSTPGFLVRGKGDAASINSAS
HGAGRAMSRSAAFKRLDKAAIAANLVEKRITLMGSDMDEAPMAYKDIHTVMAAQNDLVEV
LAKFEPRIVRMADAREKPED
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagcaaaatagcaccgaaacatccgctcttgaaagcgcaggggcgcaaaaagaa
aagataggtaacaacgagttaaaagcgctcggtattaacgacgtagatatactggtaaac
tttagccgcgtagctaatggattgctgaaacacaacgtaatggctaagcccgagatactg
gctaatctggaagccttgattgacgaccccatcccatacgccttaaaaaaaggcggtaag
tttaaaaacctggctgaagatgttattgccctgcgtaaagaaggcaaatttgtaaagcag
caacgcagcaattttaagctgaaagaagagatagccgaattcccggtatgggggttggag
catattgaggtgggtgctttggcacagatgcgtaccgcagtacagttacccattgctgtt
gccggcgctttaatgcccgatgcgcaccagggttacggcctgcctattggcggggtgctg
gctactaccgccaataccattatcccctttgctgtgggtgtggatattgcctgccgtatg
tgtttaagcatttttgatttacccgccgaagctattgataccgaaaccgataagctgaag
aatatattggtggataacacttacttcgggatggggtgtactaccaaatcgtactttgat
agttctttgttcgacagcaaaagctggggcgaaactaagttgatccgctcgttaaaggat
aaggcttatgcgcagctgggtaccagcggtaccggcaaccactttgtagaatggggcgaa
ctggatattgccgaaggtgctttaaccggtatccctgccggtaaatacctggctttactt
tcgcactcgggttcgcgtggttttggtggtgccgtagccgactactacagccgtattgcc
atgaccaaaaccaaactgcctgccgaagccaaacatttggcctggttagatctggataaa
gacgagggccaggagtactggattgccatgaaccttgccggcgaatatgccagcgccaac
caccacgagatccataacaaaattgcccatgctttgggtgttaaacccattagcatgata
gagaaccaccacaactttgcctggaaagagcagctggctgatggtaccgaagtaatggtg
caccgtaaaggcgcaacacctgccggtgaaggcgtgctgggtattatccccggcagtatg
agtacgcccggctttttagtccgcgggaaaggtgatgcggcaagcattaattccgccagt
cacggtgcgggtagggctatgagccgtagtgccgcttttaaaagactggataaagctgcc
attgccgccaatttggtagaaaaacgcatcaccctgatgggtagcgacatggacgaagcc
ccaatggcttacaaagacatccacaccgtaatggctgcgcaaaatgacctggtagaagta
ctggctaagtttgaaccgaggatagtacgtatggctgatgcgagggagaagccggaggat
tga
DBGET
integrated database retrieval system
