Mucilaginibacter jinjuensis: PQO05_07750
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Entry
PQO05_07750 CDS
T08815
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PQO05_07750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjj03021
]
PQO05_07750 (rpoC)
03400 DNA repair and recombination proteins [BR:
mjj03400
]
PQO05_07750 (rpoC)
Enzymes [BR:
mjj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PQO05_07750 (rpoC)
Transcription machinery [BR:
mjj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PQO05_07750 (rpoC)
DNA repair and recombination proteins [BR:
mjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PQO05_07750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
DUF4464
Motif
Other DBs
NCBI-ProteinID:
WCT13823
UniProt:
A0ABY7TDP3
LinkDB
All DBs
Position
1692677..1696966
Genome browser
AA seq
1429 aa
AA seq
DB search
MSYKKDNKIKSNFTSITISLASPESILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHINLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQPGIKEVDGISKMDFLTEEEYLDVLDTLPKENQYLDD
KDPQKFVAKMGAEALEELLKRLDLDQQSYDLRHQAANETSQQRKNEALKRLQVVEAFRDA
RTRIDNNPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLKLHECGLPKDMAAELFKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLVEGKAIQLHPLTCTAFNADFDGDQM
AVHVPLGNAAILEAQILMLASHNILNPANGTPITVPSQDMVLGLYYITKGRKTDEQRVVK
GQGLSFYSAEEVIIAYNEKEIDLHAFIKVKANVKERDGSIVNKLIDTTVGRVLFNQHVPE
EVGYINELLTKKSLRDIIGEVVKNTGMARAAQFLDDIKELGFQMAFRGGLSFNLQDVNIP
AQKVTLIESATKEVEEVMGNYNMGFITNNERYNQIIDIWTRINNRLTANVMEILSTDNQG
FNSVYMMLDSGARGSKEQIRQLAGMRGLMAKPQKSGSGGEIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVGETDCGTLRGIFTTALKDNEDIVE
PLYDRILGRTSLHDVHDPITGDLLVGAGQDITEEIGKAIENSPLEGIEIRSVLACESKRG
VCALCYGRNLASGKRVQSGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESQINAR
YEGIIEFENVRTVEYQTAEDGPVQVVLGRSGEFRILEEGSNKVIVTNNIPYGSYLYVKDG
SKVTKGDRICSWDPYNAVIISEFAGKSTFDAVLEGITFREESDEQTGHREKVIIDTRDKT
KNPVIQITDTMGNVIKGYNIPVGAHIAVDENEKIQTGQVIAKIPRSTGKTRDITGGLPRV
TELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGQVKKYLVPLSKHILVQDND
FIKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQ
KVQIEDPGDTRFLEKEAVDGWDFMMENDDIFDKKVVVEPGDSSTLKAGQIVSLRKLRDEN
SVLKRKDLKLVEVRDAIAATSSPLLQGITRASLGTKSFISAASFQETTKVLNEAAIAGKR
DKMLGLKENVIVGHLIPSGTGMRIYDNVRVGSQEEFDRLMASKTEDVEA
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaaatcaaaagtaactttaccagcataaccatcagttta
gcctctcccgagtctatccttgagcgttcaagcggtgaagttttgaaaccagaaaccatc
aactacaggacttataaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gttaaagattacgagtgccattgcggtaaatacaaacgtatccgttacaaaggtatcgtg
tgcgaccgttgcggtgttgaagtaaccgagaaaaaagtacgtcgtgagcgtatgggccac
attaacttagtggttcctgttgcgcacatctggtatttccgttctttaccaaacaagatc
ggttatttactgggcttgccaactaaaaagctcgaccttattatttattatgagcgttat
gtagttattcagccgggtattaaagaagttgacggaatctctaaaatggatttcctgact
gaagaagagtacctggatgttttagatacattaccaaaagaaaatcaataccttgacgac
aaggacccacaaaagtttgtagctaaaatgggtgctgaagcgttagaagaattattaaaa
cgccttgatcttgaccaacagtcttatgacttacgtcaccaggctgctaatgaaacttct
cagcaacgtaaaaacgaagccttaaaacgcttacaagttgttgaagctttccgtgatgca
cgtacacgtatagataacaatccggagtggatgatcgtaaagatcgttccggttatcccg
ccagagttacgtccattagtacctcttgagggtggccgtttcgctacctcggatttgaat
gacctttaccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagatcaaa
gcaccggaagtaattttacgtaacgaaaaacgtatgcttcaggaagcggttgactcttta
tttgataactcacgtaaagtaaacgccgttaaaactgaaggtaaccgtgccttgaaatca
ctttcagatatcctgaaaggtaaacaaggtcgtttccgtcaaaacttactgggtaaacgt
gtcgattactctgcacgttcggtaattgttgtaggtcctaacctgaaactgcacgaatgc
ggtttaccaaaagatatggctgccgagctgtttaaaccatttatcattcgtaagatgatc
gaaagaggtgtggttaaaacggtaaaatcagctaaaaagatcgttgaccgtaaagaccca
ttagtttgggatattttggaaaacgtattaaagggtcaccctgtgttattaaaccgtgcg
cctacgctgcacaggttaggtatccaggctttccaacctaaattggttgaaggtaaagcg
atccaattacacccgttaacctgtaccgcattcaacgcggattttgacggtgaccagatg
gcagttcacgtaccactaggtaacgctgcaattttggaagcccaaatcctgatgcttgct
tcacacaacatcttaaaccctgccaacggtaccccaattacagtaccatcacaggatatg
gttttaggtctttactacattactaaaggccgcaaaactgatgagcaacgtgttgtaaaa
ggacaaggtttatctttctactctgctgaagaggtgattatcgcttacaatgagaaagaa
attgacctgcatgcctttattaaagtaaaagcaaacgtaaaagaacgcgatggcagcatc
gttaataaattgattgatactactgtaggccgcgtattgtttaaccaacacgtaccagaa
gaagtaggttacatcaatgagttgctgaccaaaaaatcgcttcgtgatattattggtgaa
gttgttaaaaacaccggtatggcacgcgcagcccagttccttgatgatattaaggagtta
ggtttccaaatggcattccgtggtggtttatcatttaacctgcaggatgttaacatccct
gctcaaaaagttactttaatcgaatcagcaactaaagaagttgaagaggttatgggtaac
tataacatgggtttcattaccaacaacgagcgttacaaccagatcatcgatatctggacc
cgtatcaacaaccgcttaactgcgaatgtaatggagatcttgtcgacagataaccaaggc
ttcaactctgtttatatgatgcttgactctggagcgcgtggttcgaaagagcagatccgt
cagcttgcaggtatgcgtggtttgatggcgaaacctcagaaatcaggttctggtggcgag
atcatcgaaaacccgatcttatcaaactttaaagaaggtctgtcggtattagagtacttt
atctctacccacggtgcccgtaaaggtttggcggatacggcgttgaaaactgcggatgct
ggttacttaacccgtcgtttacatgacgttgcgcaagacatgattgttggcgaaactgat
tgcggaactttacgtggtatatttacaactgcattaaaagataacgaggatatcgttgag
ccattatacgatcgtattctgggccgtacctctctgcacgatgtgcatgaccctatcacc
ggcgatttattagttggtgccggtcaggacattactgaagagattggtaaagcgattgaa
aactctcctttagaaggtatcgaaatccgttctgtattagcttgcgaaagcaaacgcggt
gtttgtgccctttgttacggacgtaacctggcatcaggtaaacgtgtacaaagcggtgaa
gctgtgggtgtaattgcagcacagtcaatcggtgagccgggtacacagttaacacttcgt
acattccacgtgggtggtaccgcatctaacatcgcggcagagtctcagatcaatgctcgt
tacgagggtatcattgaatttgaaaacgtacgtactgtggagtaccaaacagctgaagac
ggacctgtacaggttgttttaggccgttctggtgagttccgtatcctggaagaaggcagc
aacaaggtaattgttaccaataacatcccttatggttcatacctgtatgtgaaagatggc
agcaaagttaccaaaggcgaccgtatctgttcatgggatccgtacaacgcggttatcatc
tcagaatttgcgggtaaatcaacctttgatgcagtattagagggtatcactttccgtgaa
gaatctgatgagcaaaccggtcaccgtgagaaagtaattatcgatactagggataaaact
aaaaaccctgtgatacagattactgataccatgggtaacgtaattaaaggatacaacatt
ccggtaggcgcacacattgcggttgacgagaatgagaaaatacaaaccggacaggtaatt
gctaaaattcctcgttcaaccggtaaaacacgagatattacgggtggtttaccacgcgta
actgaattgtttgaggctcgtaacccatctaacccggcagttgtgaccgagattgatggt
gttgtaaccttaggcggtgtaaaacgtggtaaccgtgaaatcactatcgaatcaaaagac
ggacaggttaaaaaatacctggtaccactttctaagcacatcctggtacaggataatgac
tttatcaaagcaggtatgccactgtcagacggttcgatctcacctgccgatatcttagcg
attaaaggccctgctgctgtacaagagtaccttgttaacggtatccaggaagtttaccgc
ttacaaggtgtgaaaatcaacgataaacactttgaggttatcgttcaccagatgatgcag
aaagtacagattgaagatccgggagatactcgtttcttagaaaaagaagcagttgacggt
tgggacttcatgatggaaaacgacgatatttttgacaagaaagttgttgttgagccaggt
gattcatctaccctgaaagccggtcagatcgtatcattacgtaagctgagagacgaaaac
tctgtactgaaacgtaaagatttgaaactggttgaagtacgcgacgcaattgcagcaaca
tcaagtccgttgttacaaggtatcacccgtgcatcgttaggtaccaaatcgttcatctcg
gcagcatcgttccaggaaactactaaagtactgaacgaagcagctatcgcaggtaaacgt
gataaaatgcttggtctgaaagagaatgtgatcgtaggtcacttgatcccttcaggtaca
ggtatgcgtatctacgataacgtacgtgtaggttcacaagaagaatttgatcgcctgatg
gcttctaaaacagaagacgtcgaggcataa
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integrated database retrieval system
