Mucilaginibacter jinjuensis: PQO05_11305
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Entry
PQO05_11305 CDS
T08815
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj02020
Two-component system
mjj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PQO05_11305 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PQO05_11305 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjj03021
]
PQO05_11305 (rpoN)
Transcription machinery [BR:
mjj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PQO05_11305 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
MarR
HTH_12
DUF4158
SAM_1
Motif
Other DBs
NCBI-ProteinID:
WCT14520
UniProt:
A0ABY7TDB6
LinkDB
All DBs
Position
complement(2476682..2478157)
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AA seq
491 aa
AA seq
DB search
MLKQNLQQKLLQKLSPQQIQFIKLLQVPTVSLDTRIKEELEENPALEDLSLTNLNEPEEQ
YPDRDPDEDTYNKDDESGEYDEFNIDDYLQEDNVNDYGSRYDQNGDDDDDHKEIPIAIQT
SFFESLQAQLDLLPISDKDFMIGQQIIGSLDDDGYLRRPIMSLTDDLAFSQNVMAEDEEV
EEMLKVIQSFDPPGIGARTLQECLLLQLKRKDVGDPIIRKAILVVQSYLDEFTRKHYDKL
ERSLNMTSEELRAVINEILKLNPKPGDSNAVNTKQLQVIPDFHIVNDDGRLLLTLNAKNA
PDLRVSRSYMDMFEHYDKASQKDKKMKEAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNA
IMQYQYDFFLTGDERNLRPMILKDIADRIGMDISTVSRVANSKYVQTEFGTFLLKSFFSE
AIQTESGEEVSNKEVKKILEDCIGGEDKRHPLADEKLTEILKERGYNIARRTVAKYREQM
NIPVARLRREV
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacagaatcttcaacaaaaacttttacaaaaactttcccctcagcagatacag
tttatcaagctgttacaggttcctactgtttcgctcgatacccgtattaaagaagagctg
gaggaaaatcctgctctcgaagatctaagcttaactaatcttaacgagcccgaagaacag
tatcccgaccgcgacccggatgaggatacctataataaagacgacgaaagcggcgaatac
gacgaatttaatattgacgattatttacaggaagataacgttaacgattatggctcgcgc
tatgaccagaacggtgatgacgatgacgaccataaagagataccgattgctatacagact
tctttctttgaaagcctacaggcccagttagacctgctgcctatttctgacaaggatttc
atgatcggtcagcaaatcatcggtagtttagacgatgatggttacctgcgccgccctatt
atgtcattgactgacgaccttgccttctcgcaaaacgtaatggctgaggatgaagaggtt
gaagaaatgctgaaggtgatccagtcgttcgacccgcctggtatcggtgcacgtacctta
caggaatgtttgttactgcaattgaaacgtaaagatgttggcgaccccattatccgcaag
gctatactggttgtacaaagctacctggacgagtttacccgcaagcattacgataagctg
gaacgttcgcttaacatgacctcggaagagctgcgtgcggttataaacgagatattaaaa
ctgaacccaaaaccaggcgactctaacgctgtaaataccaaacaactgcaggttatcccc
gatttccatattgttaatgatgatggccgcttattgcttaccctcaatgctaaaaatgct
cctgacctgcgtgtaagtcgctcgtacatggatatgtttgagcattacgacaaggcttcg
caaaaggataaaaagatgaaggaggccgtgcagtttgtgaaacaaaagctcgactctgcc
aagtggtttattgatgctattaagcaacgccagcaaacgctgcttaaaaccatgaacgcc
attatgcagtaccagtacgatttcttcctgacgggagatgagcgtaacctgcgccccatg
atcttaaaagatattgccgaccgtatcgggatggatatttcaaccgtatcgcgtgtggct
aactctaaatatgtgcaaaccgagtttggcaccttcctgttgaaatctttcttctctgaa
gctattcagaccgaaagcggtgaagaagtatcgaacaaagaggttaaaaagatcctggaa
gattgcatcggcggcgaagacaaacgccatcctcttgctgatgagaaacttaccgaaata
cttaaagagcgcggctacaacatagcccgccgtaccgtagccaaataccgcgaacaaatg
aacatcccggtagcaaggcttagacgggaggtataa
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