Mucilaginibacter jinjuensis: PQO05_12190
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Entry
PQO05_12190 CDS
T08815
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PQO05_12190 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjj03400
]
PQO05_12190 (ligD)
Enzymes [BR:
mjj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PQO05_12190 (ligD)
DNA repair and recombination proteins [BR:
mjj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PQO05_12190 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
GH3
Motif
Other DBs
NCBI-ProteinID:
WCT14695
LinkDB
All DBs
Position
2692541..2695270
Genome browser
AA seq
909 aa
AA seq
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MSLEKYAEKRDFTKTAEPKAGRSKDKDHLMFVIQKHDASRLHYDFRLEMDGVLKSWAVPK
GPSLNPKEKHLAMMVEDHPFDYRNFEGIIPQGEYGGGTVIVWDQGTYEPIEEIKGKKAQE
KHLLKQLASGSLKIKLHGEKLDGEFALVKTHGMGENAWLLIKHNDEFASDKDITKKDKSV
LSGKTIPQMEKTGEKVWQHGHEEEVEKADKKSKKKAPTKPEVLIADENEDNDTDEVDVEA
LLKKAPKSKIPTGVKPMKATLVDEPFDDPDWVYEVKWDGYRAVGVINNDDAELISRNNIP
FNERFYPIHNLLKKWKFNAVVDGEILVLNDKGISDFGALQNWRSEADGELVFYVFDILWY
EGKNLMELALTERQAILQQVIPTDDDRIRISQVFRASGTEFFNAAEKMGLEGIIAKKASS
TYTSDLRSKDWLKIKAHKRQEVIIAGFTKNAGTSKAFSALIMGVYDQGELKYVGKVGTGF
SDKLQKEMMEQFKPLITDESPFDVIPDVDKPSRFRPQRMGAKPTWLKPELVGEVAFAEVT
SDGVFRQASFQGMRIDKKAKDVVLERPEETAEAVTEVEQQSESKHAKAIKPPKEMERRTL
LNPTEETQVRKICGHDLKFTHLSKVYWPEDGVTKRDMFNYYYQVADYILPYLKDRPMSLN
RFPNGIHGSSFYQKDIKGKAPDWVTKTFPYTTSDGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVQSPDNPDYCVIDLDPDKNTFDQVIEAAQEVRKVLDAIDVPCFPKTSGSTGMHI
YIPLESKYTYDQSQLFARIIVGIVHKQIPDYTSLERMVANRKGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPVSWDEVKPGLTMKDFTIFNTIDRLKETGDLFKGVLGKGIDLEKTI
KKAQSIFGK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaaatatgccgagaaacgggactttaccaagaccgcggaacccaaagcc
ggaagaagtaaggataaagatcatttgatgtttgtgatccagaaacatgatgcaagcagg
ctgcattatgattttaggctggagatggatggcgtattaaaaagctgggcggtgcctaaa
ggcccttcactcaaccccaaagagaagcacctggccatgatggtggaagaccacccgttt
gattaccgcaattttgagggcattatcccgcaaggtgaatacggcgggggtaccgtaatt
gtatgggatcagggtacatatgagccgatagaagaaattaagggtaaaaaagcacaggaa
aagcatttgcttaaacaacttgcatcgggttcgctcaaaataaaactacatggcgaaaaa
ctggacggcgaatttgctttagtgaaaacccacggcatgggcgaaaacgcctggctgctg
attaaacataacgatgagtttgccagcgataaggatattactaagaaagataaatcggtg
ctttcaggcaaaaccatcccgcaaatggaaaaaacaggcgaaaaagtttggcagcacgga
catgaagaagaggtagagaaagctgataagaaaagtaaaaaaaaagccccaactaaaccc
gaagtactgattgctgatgaaaatgaggacaatgatacggatgaagttgatgtagaagcc
cttcttaaaaaagcacccaaatccaaaattccaactggtgttaagccaatgaaagccaca
ttggttgatgagccttttgatgaccccgattgggtttatgaagtgaaatgggatggttac
cgggctgttggagtaattaataatgatgatgccgaattgatttcccgcaataatatccca
ttcaatgagcgattttatcctatccataacctgcttaaaaaatggaaatttaacgctgtt
gttgatggcgagatactggtattaaacgataaaggcatttcagatttcggcgcattgcaa
aactggcgaagtgaagctgatggcgaactcgttttttacgtattcgatatactgtggtac
gaaggcaaaaacctgatggagctggcactgacggaacggcaggctatcctgcaacaggta
atcccaacagatgatgaccggatccgcatcagtcaggtatttcgggcaagcggtaccgag
ttttttaatgccgctgaaaagatggggttggagggtatcatagccaaaaaagccagtagc
acttatacttcagacttgcgctctaaggattggctgaagatcaaagcgcacaaacgccag
gaagtaattattgccggttttaccaaaaatgcaggtaccagcaaggcatttagtgcattg
attatgggcgtttacgatcagggcgaacttaagtacgtgggtaaggtaggtacgggtttt
tctgataaactacagaaagaaatgatggagcaatttaagcccctcattaccgatgagagc
ccgtttgatgttattccggatgtagataagccctcacgtttccgcccgcaaaggatgggg
gctaaacctacctggcttaaaccggaactggtaggagaggtggcttttgccgaggttacc
agtgatggtgtttttcgccaggcatctttccagggtatgcggatagataagaaagcgaag
gacgttgtactggagcgaccggaagaaacagccgaagccgttaccgaagttgaacaacaa
tccgaaagcaaacatgccaaagccattaaaccacccaaagaaatggagcgaagaacactg
cttaacccgaccgaagaaacgcaggttagaaagatttgcgggcacgatttaaaatttact
catttaagtaaggtttactggcccgaagatggcgttaccaagcgcgatatgtttaactat
tattaccaggtggctgattatattttgccttatctgaaggatcgcccgatgtcgctcaac
cgttttccgaatgggatacacggatcgagtttttaccagaaagatataaaaggtaaagcg
cccgactgggtgaccaaaacttttccgtacaccaccagtgatggggaacacaaggaatat
ttggtaggctcggatgaatcttatttactttggatggcatcgcttggctgcattgaaatg
aacccctggtttagccgcgtgcaatcgccggataaccccgactattgcgtgattgacctt
gacccggacaagaatacttttgaccaggtgattgaagcagcgcaggaagtacgcaaggtg
ctggatgctattgatgtgccgtgtttccccaaaacctcaggctcaaccgggatgcatatt
tacataccgttggagtccaaatatacttacgatcaatcacagctttttgcccgcatcatt
gtagggattgtgcataagcaaatccctgattacaccagcctggagcgaatggttgccaac
cgtaaaggtaaaatgtacctcgattttttgcaaaaccgccccggcgctaccattgctggt
ccatattcgctgcggcctaagcccggtgcaacggtatcgatgccggtaagctgggacgag
gttaagccaggtttaaccatgaaagactttactatatttaataccatagaccgcctgaaa
gaaaccggcgacctgtttaaaggtgttttaggcaaggggatcgatctggaaaaaacgatt
aagaaggcacaaagcatattcggtaaataa
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