Mucilaginibacter jinjuensis: PQO05_19510
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Entry
PQO05_19510 CDS
T08815
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mjj
Mucilaginibacter jinjuensis
Pathway
mjj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQO05_19510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjj03019
]
PQO05_19510
03400 DNA repair and recombination proteins [BR:
mjj03400
]
PQO05_19510
Enzymes [BR:
mjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PQO05_19510
Messenger RNA biogenesis [BR:
mjj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PQO05_19510
DNA repair and recombination proteins [BR:
mjj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PQO05_19510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
DDT
Motif
Other DBs
NCBI-ProteinID:
WCT10927
LinkDB
All DBs
Position
complement(4501854..4503746)
Genome browser
AA seq
630 aa
AA seq
DB search
MTIQEILKQYWNHQHFRPLQEEIISAVLDGKDALALLPTGGGKSVCFQVPAMAMDGICLV
ISPLIALMKDQVENLRAKGINAISIVSGMSRREIDLALDNCIYGDVKFLYLSPERLLSEL
VQERIKYMRVNLIAVDEAHCISQWGYDFRPSYLHIAELRNLHPQVPILALTATATVNVKI
DIIEKLQLRNAVTFQQSFERKNISYLVEYEENKLRRMLQVARGAKGSGIIYVRSRKDTFE
LAQFLNQNGLRADYYHAGLSSDLRSSKQNNWKNNLTNIMVATNAFGMGIDKPDVRFVIHR
DLPESLEAYYQEAGRAGRDEKRAYAVLLYNSADKVLMEKKFEASYPTLEEMKQVYHYLAN
YFQLAYGAGEGLSFDFDLKDFCSKFKLDAIKTLNALKFLEQDEYLSVNESVFLPSRFRFE
VMNEQLYNFQIQNPAWDPFIKVLLRSYGGAFDHYINIREFDISKRTGTTVQMIIDNLNQL
QDFGVLNYLPQTDKPQITYLKPRQTGANMLISINYINERKQLYRDKMEAVFHYTEAQKCR
SQLLLAYFDEYDAPKCSLCDICLQEKRQNNRQEIAENLATEIIQQLTTSPLTLDQLITAL
NGNHQNEKLAAIRLLLDAGKVKTNGDVYYL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgacgatacaagaaattttaaagcaatactggaaccatcaacactttcgcccgctgcag
gaggaaattatttctgccgtgctggatggcaaggatgcgctggctttattgcctacaggt
ggtggtaagtcggtttgcttccaggtgcctgctatggcgatggatggtatttgtctggtg
atctctccattgattgccttgatgaaagaccaggtagagaacctgcgtgctaaagggatt
aacgccatatctattgtatcaggcatgagcaggcgggaaattgatctggcattagataat
tgtatttacggcgatgtaaagtttctatacctctcacccgagcgtttattgtctgagttg
gtgcaggaacgtatcaagtatatgagggtaaacctcattgcggttgatgaagcgcattgt
atctcgcaatggggttacgatttccgtccgtcatacctacatattgccgagctgcgcaac
ctgcatccgcaagtacctatactggcgcttacggcaaccgccacggtaaatgttaagatt
gatattattgagaagctgcaattgcgaaatgcagttacgtttcagcaaagtttcgaacgt
aaaaatatcagttacctggtagaatatgaggagaataaactccgccggatgttgcaggtt
gcccgtggtgccaaaggcagcggcattatatatgtacgcagccgtaaagacacttttgag
ctggcgcaatttttaaatcagaatggtttacgtgccgattattatcacgccggtttatcg
tcagacctaagatcatccaaacagaacaactggaaaaataaccttaccaatataatggta
gccaccaatgctttcggaatggggattgataagccggatgtaaggtttgtgatccaccgc
gatctgcccgagagcctggaagcgtattaccaggaagcaggcagggctggtcgggatgag
aagcgtgcctacgccgtactcctatataatagtgccgataaggtgctgatggagaaaaaa
tttgaggccagttacccaaccctcgaagaaatgaagcaggtataccattacctagctaat
tactttcaactggcctacggtgcaggcgaggggctgagttttgatttcgacctgaaagat
ttttgcagcaagtttaagctcgatgccatcaaaactttaaatgccttgaagtttctggag
caggatgaatacctgtctgttaacgagagtgtatttctgccatcacgtttccgtttcgag
gtaatgaatgagcagctgtataacttccagatccaaaacccggcatgggatccttttatt
aaggtattgctgaggtcttatggtggtgcattcgaccactatattaatatccgcgaattc
gatatctccaaacgaacgggtaccacggtgcagatgatcatcgataacctgaaccagttg
caggattttggtgtgctcaattatctccctcaaaccgataaaccacagatcacttattta
aagccccggcaaaccggtgctaatatgctcatcagcattaactatattaatgagcgcaag
cagctgtaccgcgataaaatggaagccgtgtttcattataccgaagcccagaaatgccgc
agtcagttattgttagcttattttgatgagtatgatgcgcccaaatgcagcctctgcgat
atatgcctgcaagagaaacgccaaaacaaccgtcaggaaatagccgaaaacctcgctaca
gagatcattcagcagcttaccacatcacccttaaccctcgatcagctgattaccgcgctc
aacggtaatcaccaaaacgaaaaactggccgccatcaggctgttattagatgccgggaag
gtaaaaaccaacggcgatgtgtattatttatag
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