Candidatus Methanospirare jalkutatii: N2V74_00305
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Entry
N2V74_00305 CDS
T09964
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mjk
Candidatus Methanospirare jalkutatii
Brite
KEGG Orthology (KO) [BR:
mjk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mjk03016
]
N2V74_00305
Enzymes [BR:
mjk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N2V74_00305
Transfer RNA biogenesis [BR:
mjk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N2V74_00305
Prokaryotic type
tRNA splicing ligases
N2V74_00305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYZ40177
LinkDB
All DBs
Position
53720..55231
Genome browser
AA seq
503 aa
AA seq
DB search
MAEIPFKKIREGLWEIPQDYKPFMRVPARVYATKELLDAMKGDLTLQQVVNVASLPGIVK
YSLVMPDGHQGYGFPIGGVAATDAENGVISPGGVGYDINCGVRLIRTDLTEKDVRPHLKE
LLDGLFENIPAGLGLSGKIRLTQSQLEEVLQGGSEWCVEQGYGWEEDLERTEDGGRIESA
NPEKIDEKSMKRGAPQLATLGSGNHFLEVQVVDEIYDEHLAKSFGIEQEGQVAILVHTGG
RGFSHGVCSYYLRVFEREMRSDKTLSKILQLERELACAYLSSKVGMDYFEAMCSCANYAW
ANRQLITYFVRKVFSDVFKTDAEKLGIHLVYDVAHNIAKIEEHDVNGTRKKLCVHRKGAT
RAFPAGDERLPPAYRSVGQPVLIPGSMGTRSFVALGTEIAARETFGSCAHGSGRRLSRTA
AMRKFRGEEVKRELERRNILVKARERTRSDVRRKRGVPFDRFGELAEEVSAAYKNPEEVV
ASCELAGIAKKVAAFRAIGIIKG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcagagattccgtttaagaagataagggagggtttgtgggagattccgcaggattac
aagccatttatgagggtgcctgcgagggtttacgcaacaaaggagcttcttgatgcgatg
aaaggggacctgacgcttcaacaggtcgtgaatgtcgcatcgctccctggtattgtgaag
tattcgcttgtgatgcctgacggtcatcaaggctacggcttcccaatcggaggcgtcgca
gcaacagatgcggagaacggcgtgatttcgcccggaggcgtcggctacgacatcaactgc
ggtgtccgcctcattcgcacagacttgacagagaaggatgtgagacctcacctgaaggag
ctgcttgacggtctttttgagaatattcctgcgggtctcggactttcaggcaaaataagg
ctcacgcaaagtcagcttgaggaagtccttcaaggaggctctgaatggtgcgttgagcaa
ggctacggctgggaagaagaccttgagcgcacagaagacggtggtaggattgaatctgcg
aaccctgagaagattgacgagaaatctatgaaaaggggcgcaccgcaactcgcaacgctc
ggcagcggaaaccatttccttgaggtgcaggtcgttgacgagatttacgacgagcatctt
gcgaaatccttcgggattgagcaggaaggtcaggtcgcaattttagtccacacgggcgga
agaggcttctctcacggcgtctgctcttactatttgagggtatttgagcgagagatgcgt
tcagataagacgctctctaagatattgcagttggagagagagctcgcctgcgcctatctt
tcgtcaaaagtcggcatggactactttgaggcaatgtgcagttgtgcgaactacgcatgg
gctaaccgacaactcatcacttacttcgtcaggaaagtcttctctgatgtcttcaagaca
gatgcggaaaagcttggaattcaccttgtttacgatgttgcgcacaatattgcgaaaatt
gaggagcatgatgtcaacggcactcgcaagaagctctgcgtccacaggaaaggagcaacg
agagctttcccagcaggagacgagcgacttcctcccgcttacagaagcgtcggtcagcca
gttctaatcccaggttcaatgggaactcgctctttcgtcgccctcggcactgagattgct
gcaagagagacattcggcagttgcgctcacggctcaggcaggcgtctcagcaggactgct
gcgatgcggaaattcaggggtgaagaggtgaagcgtgagcttgagcgtcgcaatattctt
gtgaaggctcgtgagcgaacccgttcagatgtgagaaggaagcgaggcgtcccattcgac
agattcggcgagctcgcagaggaagtctccgccgcttacaagaatcctgaagaggtcgtc
gcaagctgcgagctcgcaggcatcgctaaaaaggtcgctgctttcagagcaataggcatc
ataaaaggctga
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