Candidatus Methanospirare jalkutatii: N2V74_05550
Help
Entry
N2V74_05550 CDS
T09964
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mjk
Candidatus Methanospirare jalkutatii
Brite
KEGG Orthology (KO) [BR:
mjk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mjk03016
]
N2V74_05550
Enzymes [BR:
mjk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
N2V74_05550
Transfer RNA biogenesis [BR:
mjk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
N2V74_05550
Prokaryotic type
tRNA splicing ligases
N2V74_05550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UYZ39665
LinkDB
All DBs
Position
complement(1103456..1104967)
Genome browser
AA seq
503 aa
AA seq
DB search
MAEIPFKKIREGLWEIPQDYKPFMRVPARVYATKELLDAMKGDLTLQQVVNVASLPGIVK
YSLVMPDGHQGYGFPIGGVAATDAENGVISPGGVGYDINCGVRLIRTDLTEKDVRPHLKE
LLDGLFENIPAGLGLSGKIRLTQSQLEEVLQGGSEWCVEQGYGWEEDLERTEDGGRIESA
NPEKIDEKSMKRGAPQLATLGSGNHFLEVQVVDEIYDEHLAKSFGIEQEGQVAILVHTGG
RGFSHGVCSYYLRVFEREMRSDKTLSKILQLERELACAYLSSKVGMDYFEAMCSCANYAW
ANRQLITYFVRKVFSDVFKTDAEKLGIHLVYDVAHNIAKIEEHDVNGTRKKLCVHRKGAT
RAFPAGDERLPPAYRSVGQPVLIPGSMGTRSFVAVGTEIAARETFGSCAHGSGRRLSRTA
AMRKFRGEEVKRELERRNILVKARERTRSDVRRKRGVPFDRFGELAEEVSAAYKNPEEVV
ASCELAGIAKKVAAFRAIGIIKG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggcagagattccgtttaagaagataagggagggtttgtgggagattccgcaggattac
aagccatttatgagggtgcctgcgagggtttacgcaacaaaggagcttcttgatgcgatg
aaaggggacctgacgcttcaacaggtcgtgaatgtcgcatcgctccctggtattgtgaag
tattcgcttgtgatgcctgacggtcatcaaggctacggcttcccaatcggaggcgtcgca
gcaacagatgcggagaacggcgtgatttcgcccggaggcgtcggctacgacatcaactgc
ggtgtccgcctcattcgcacagacttgacagagaaggatgtgagacctcacctgaaggag
ctgcttgacggtctttttgagaatattcctgcgggtctcggactttcaggcaaaataagg
ctcacgcaaagtcagcttgaggaagtccttcaaggaggctctgaatggtgcgttgagcaa
ggctacggctgggaagaagaccttgagcgcacagaagacggtggtaggattgaatctgcg
aaccctgagaagattgacgagaaatctatgaaaaggggcgcaccgcaactcgcaacgctc
ggcagcggaaaccatttccttgaggtgcaggtcgttgacgagatttacgacgagcatctt
gcgaaatccttcgggattgagcaggaaggtcaggtcgcaattttagtccacacgggcgga
agaggcttctctcacggcgtctgctcttactatttgagggtatttgagcgagagatgcgt
tcagataagacgctctctaagatattgcagttggagagagagcttgcttgcgcttacctt
tcgtcaaaagtcggcatggactactttgaggcgatgtgcagttgtgcgaactacgcatgg
gctaaccgacaactcatcacttacttcgtcaggaaagtcttctctgatgtcttcaagaca
gatgcggaaaagcttggaattcaccttgtttacgatgttgcgcacaatattgcgaaaatt
gaggagcatgatgtcaacggcactcgcaagaagctctgcgtccacaggaaaggagcaacg
agggcattcccagcaggagacgagcgacttcctcccgcttacagaagcgtcggtcagcca
gttctaatcccaggttcaatgggaactcgctctttcgtcgccgtcggcactgagattgct
gcaagagagacattcggcagttgcgctcacggctcaggcaggcgtctcagcaggactgct
gcgatgcggaaattcaggggtgaagaggtgaagcgtgagcttgagcgtcgcaatattctt
gtgaaggctcgtgagcgaacccgttcagatgtgagaaggaagcgaggcgtcccattcgac
agattcggcgagctcgcagaggaagtctccgccgcttacaagaatcctgaagaggtcgtc
gcaagctgcgagctcgcaggcatcgctaaaaaggtcgctgctttcagagcaataggcatc
ataaaaggctga
DBGET
integrated database retrieval system
