Mycobacterium sp. JLS: Mjls_3879
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Entry
Mjls_3879 CDS
T00482
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mjl
Mycobacterium sp. JLS
Pathway
mjl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mjls_3879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mjl03021
]
Mjls_3879
03019 Messenger RNA biogenesis [BR:
mjl03019
]
Mjls_3879
Transcription machinery [BR:
mjl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Mjls_3879
Messenger RNA biogenesis [BR:
mjl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Mjls_3879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
VWA_2
Fungal_virus_P2_C
AAA_22
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ABN99655
UniProt:
A0A5Q5CJX8
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All DBs
Position
complement(4105191..4107182)
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AA seq
663 aa
AA seq
DB search
MTDTDLFTADSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSMV
LPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRERRSASRQ
AGAAEAKAPEALEAKAPEVKAPEVKAPEVKADAPAEEAAAEPKTERPRNDRTKAEKPAAQ
QPDGEQPKGDQPKGEQSRGDQRRSDRPRGDQSDTRSDDRSDSDQQQGQGNRNNSNNSADG
DDDGDGRGGRRGRRFRDRRRRGERGGEGGGGGDTEIREDDVVQPVAGILDVLDNYAFVRT
SGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAVKVPKEGEGGGQNQRQKFNPLVRLDSVNG
GPVEDARKRPEFGKLTPLYPNQRLRLETSPDKLTTRVIDLIMPIGKGQRALIVSPPKAGK
TTIMQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAE
LAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAA
RNIEEGGSLTIVATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSG
TRKDELLLGPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKTNYEFLVQVSKNTPGSV
DND
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcttcacggccgacagcgctgagcgaacagagttgccgaacgtc
gtgaacaccgaaacttccacggcgtcggagggcccggccgtcaccacgacgaccgcggag
tccgccccgaccgccgacgtggcgtcgggtgaccgtgccgcctcgctgacctcgatggtc
ctgccggaactgcgcgcgctggcgcgccagatcggcgtcgaaggcgcctccggcatgcgc
aagagcgaactgatcgccgcgatccgcgaacgccgcggcgacggcggtgccgccaaggcg
gagagcgccgccgcaccgcagacgcccccgcgccgtgagcgtcgcagcgcatcgcgtcag
gccggcgccgccgaggccaaggctccagaggccctcgaggccaaggcccccgaggtgaag
gcccccgaggtgaaggcccccgaggtgaaggctgatgcaccggccgaagaggccgctgcg
gagcccaagaccgagcggcccaggaacgaccgcaccaaggccgagaagcccgcggcgcag
cagcccgacggcgagcagcccaagggagaccagccgaagggcgagcagtccaggggcgat
cagcgccggtccgatcgtccgcggggcgatcagtccgacaccaggtccgacgaccggtcc
gacagtgaccagcagcagggccagggcaaccgaaacaacagcaacaacagcgccgatggc
gacgacgacggcgacggccggggtggccgccgcggccgccggttccgcgaccgccggcgc
cgtggtgagcgcggtggcgagggcggcggcggtggcgataccgagatccgcgaggacgac
gtcgtccagcccgtcgccggcatcctcgacgtcctcgacaactacgcgttcgtccgcacc
tcgggctacctgcccggtccgaacgacgtctacgtgtcgatgaacatggtgcgcaagaac
gggctgcgccgcggcgacgccgtcaccggtgcggtcaaggtgcccaaggagggcgaaggc
ggcggtcagaaccagcgccagaagttcaatccgctggtgcgtctcgacagcgtcaacggc
gggccggtcgaggatgcgaggaagcgtcccgaattcggcaagctgaccccgctgtacccc
aatcagcggctgcgtctggagacctctccggacaagctgaccacccgcgtcatcgacctg
atcatgccgatcggcaaggggcagcgcgcgctgatcgtgtcgccgcccaaggccggtaag
accacgatcatgcaggacatcgccaacgcgatcacccgcaacaacccggaatgccacctg
atggtggtgctcgtcgacgagcgtccggaagaggtcaccgacatgcagcgctcggtcaag
ggtgaggtcatcgcctcgaccttcgaccggccgccgtccgaccacaccacggtcgccgaa
ctggccatcgagcgcgccaagcgcctggtggagcagggcaaggacgtcgtggtgctcctc
gactcgatcacccgcctcggccgggcctacaacaacgcctcgccggcctcgggccgcatc
ctgtccggtggtgtggactcgaccgcgttgtacccgccgaagcgcttcctgggtgccgca
cgcaacatcgaagagggcggctcactgaccatcgtcgcgaccgcgatggtggagaccggt
tcgaccggtgacacggtcatcttcgaggagttcaagggcaccggtaacgccgagctcaag
ctcgatcgcaagatcgccgaacgccgggtgttccccgcggtcgacgtgaacccgtcgggc
acccgtaaggacgagctgctgctcggccccgacgagttcgcgatcgtgcacaagctgcgc
cgggtgctgtcgggtctcgacagccatcaggccatcgacctgctgatgagtcagctgcgc
aagaccaagacgaactacgagttcctggtgcaggtctccaagaacacaccggggtcggtg
gacaacgactga
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